Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s72.

Sample reads: 96,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3012.60 31298.64 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Co2 ENSMUSG00000064354 2379.70 24723.29 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
3. Ptma ENSMUSG00000026238 2367.04 24591.76 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd1 ENSMUSG00000064341 2362.82 24547.92 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Atp6 ENSMUSG00000064357 2168.73 22531.47 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Nd4 ENSMUSG00000064363 1881.82 19550.69 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. Col1a1 ENSMUSG00000001506 1299.55 13501.34 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
8. mt-Co1 ENSMUSG00000064351 1215.16 12624.60 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Actb ENSMUSG00000029580 1168.75 12142.43 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. Igf2 ENSMUSG00000048583 894.50 9293.18 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
11. mt-Nd2 ENSMUSG00000064345 894.50 9293.18 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Nd3 ENSMUSG00000064360 864.96 8986.28 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. H19 ENSMUSG00000000031 835.43 8679.49 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. mt-Rnr2 ENSMUSG00000064339 620.24 6443.83 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
15. Mdk ENSMUSG00000027239 561.17 5830.13 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Eef1a1 ENSMUSG00000037742 510.54 5304.13 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Co3 ENSMUSG00000064358 472.56 4909.54 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. mt-Nd5 ENSMUSG00000064367 443.03 4602.75 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Gm13340 ENSMUSG00000083563 430.37 4471.22 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Cfl1 ENSMUSG00000056201 388.18 4032.90 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Rpsa ENSMUSG00000032518 379.74 3945.21 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Col3a1 ENSMUSG00000026043 350.20 3638.31 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
23. Col1a2 ENSMUSG00000029661 341.76 3550.63 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
24. Hbb-y ENSMUSG00000052187 299.57 3112.31 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
25. Tuba1b ENSMUSG00000023004 261.60 2717.83 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Meg3 ENSMUSG00000021268 253.16 2630.14 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
27. Npm1 ENSMUSG00000057113 248.94 2586.30 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Rpl18a ENSMUSG00000045128 240.50 2498.61 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
29. Hmga2 ENSMUSG00000056758 227.84 2367.09 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
30. Rpl4 ENSMUSG00000032399 227.84 2367.09 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Tubb5 ENSMUSG00000001525 227.84 2367.09 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
32. Hsp90ab1 ENSMUSG00000023944 219.40 2279.40 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Rps26 ENSMUSG00000025362 210.97 2191.82 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
34. Hba-x ENSMUSG00000055609 198.31 2060.29 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
35. Lamp1 ENSMUSG00000031447 189.87 1972.61 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
36. Nedd4 ENSMUSG00000032216 189.87 1972.61 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
37. Set ENSMUSG00000054766 189.87 1972.61 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
38. Eif5a ENSMUSG00000078812 185.65 1928.76 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
39. Ago2 ENSMUSG00000036698 181.43 1884.92 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
40. Hnrnpc ENSMUSG00000060373 181.43 1884.92 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
41. Pkm ENSMUSG00000032294 181.43 1884.92 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
42. Myl6 ENSMUSG00000090841 177.21 1841.08 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
43. Rps20 ENSMUSG00000028234 177.21 1841.08 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
44. mt-Rnr1 ENSMUSG00000064337 177.21 1841.08 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
45. Fkbp1a ENSMUSG00000032966 168.77 1753.39 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
46. Rpl23 ENSMUSG00000071415 168.77 1753.39 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
47. Atp5g3 ENSMUSG00000018770 164.55 1709.55 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Eef1b2 ENSMUSG00000025967 164.55 1709.55 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Sparc ENSMUSG00000018593 164.55 1709.55 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
50. Chchd2 ENSMUSG00000070493 160.33 1665.71 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
51. Peg3 ENSMUSG00000002265 160.33 1665.71 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
52. Tpt1 ENSMUSG00000060126 160.33 1665.71 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
53. Ubb ENSMUSG00000019505 160.33 1665.71 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
54. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 151.90 1578.13 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
55. Pbx1 ENSMUSG00000052534 151.90 1578.13 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
56. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 151.90 1578.13 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
57. U2af2 ENSMUSG00000030435 151.90 1578.13 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
58. Tmsb4x ENSMUSG00000049775 147.68 1534.28 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
59. Ywhab ENSMUSG00000018326 147.68 1534.28 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
60. Rplp1 ENSMUSG00000007892 143.46 1490.44 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
61. Hbb-bh1 ENSMUSG00000052217 139.24 1446.60 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
62. Acta2 ENSMUSG00000035783 135.02 1402.76 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
63. Gm5805 ENSMUSG00000061848 130.80 1358.91 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
64. Gnb2l1 Gnb2l1 130.80 1358.91
65. Grb10 ENSMUSG00000020176 130.80 1358.91 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
66. Plagl1 ENSMUSG00000019817 130.80 1358.91 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
67. Tmsb10 ENSMUSG00000079523 130.80 1358.91 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
68. Rpl32 ENSMUSG00000057841 126.58 1315.07 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
69. Son ENSMUSG00000022961 122.36 1271.23 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
70. Hba-a1 ENSMUSG00000069919 118.14 1227.39 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
71. Ngfrap1 118.14 1227.39 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
72. Pcbp1 ENSMUSG00000051695 118.14 1227.39 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
73. Cox8a ENSMUSG00000035885 113.92 1183.54 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
74. Rpl39-ps ENSMUSG00000036305 113.92 1183.54 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
75. Calr ENSMUSG00000003814 109.70 1139.70 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
76. Eif4g2 ENSMUSG00000005610 109.70 1139.70 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
77. Flna ENSMUSG00000031328 109.70 1139.70 filamin, alpha [Source:MGI Symbol;Acc:MGI:95556]
78. Ybx1 ENSMUSG00000028639 109.70 1139.70 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
79. Rps5 ENSMUSG00000012848 105.48 1095.86 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
80. Tecr ENSMUSG00000031708 105.48 1095.86 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
81. Banf1 ENSMUSG00000024844 101.26 1052.02 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
82. Ddx5 ENSMUSG00000020719 101.26 1052.02 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
83. Gm5963 ENSMUSG00000052192 101.26 1052.02 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
84. Hsp90aa1 ENSMUSG00000021270 101.26 1052.02 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
85. Rpl8 ENSMUSG00000003970 101.26 1052.02 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
86. Rps4x ENSMUSG00000031320 101.26 1052.02 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
87. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 97.04 1008.17 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
88. Igfbp4 ENSMUSG00000017493 97.04 1008.17 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
89. Ndufa12 ENSMUSG00000020022 97.04 1008.17 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
90. Postn ENSMUSG00000027750 97.04 1008.17 periostin, osteoblast specific factor [Source:MGI Symbol;Acc:MGI:1926321]
91. Wbp5 97.04 1008.17 WW domain binding protein 5
92. Eef2 ENSMUSG00000034994 92.83 964.43 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
93. Morf4l2 ENSMUSG00000031422 92.83 964.43 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
94. Gpc3 ENSMUSG00000055653 88.61 920.59 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
95. Jund ENSMUSG00000071076, ENSMUSG00000110974 88.61 920.59 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
96. Mapre1 ENSMUSG00000027479 88.61 920.59 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
97. Pfn1 ENSMUSG00000018293 88.61 920.59 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
98. Ran ENSMUSG00000029430 88.61 920.59 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
99. Rpl37 ENSMUSG00000041841 88.61 920.59 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
100. Sf3b4 ENSMUSG00000068856 88.61 920.59 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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