Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s70.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Nd1 ENSMUSG00000064341 3538.86 36769.20 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
2. mt-Cytb ENSMUSG00000064370 2342.62 24340.12 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 2242.94 23304.43 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Co2 ENSMUSG00000064354 1993.72 20715.00 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. Ptma ENSMUSG00000026238 1694.66 17607.73 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Atp6 ENSMUSG00000064357 1495.29 15536.25 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Rnr2 ENSMUSG00000064339 1345.76 13982.62 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. Col1a1 ENSMUSG00000001506 1196.23 12428.98 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
9. mt-Nd3 ENSMUSG00000064360 1196.23 12428.98 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Gm10800 ENSMUSG00000075014 996.86 10357.50 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
11. Actb ENSMUSG00000029580 897.17 9321.71 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Mdk ENSMUSG00000027239 897.17 9321.71 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. H19 ENSMUSG00000000031 747.65 7768.18 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Igf2 ENSMUSG00000048583 697.80 7250.23 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. mt-Co1 ENSMUSG00000064351 598.12 6214.54 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
16. mt-Nd2 ENSMUSG00000064345 548.27 5696.59 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Eef1a1 ENSMUSG00000037742 498.43 5178.75 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Hmga2 ENSMUSG00000056758 498.43 5178.75 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Rpl18a ENSMUSG00000045128 448.59 4660.91 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
20. mt-Co3 ENSMUSG00000064358 448.59 4660.91 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
21. mt-Nd5 ENSMUSG00000064367 448.59 4660.91 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Peg3 ENSMUSG00000002265 398.74 4142.96 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
23. mt-Atp8 ENSMUSG00000064356 398.74 4142.96 mitochondrially encoded ATP synthase 8 [Source:MGI Symbol;Acc:MGI:99926]
24. Meg3 ENSMUSG00000021268 348.90 3625.11 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
25. Gm13340 ENSMUSG00000083563 299.06 3107.27 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
26. Ngfrap1 299.06 3107.27 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
27. Capns1 ENSMUSG00000001794 249.22 2589.43 calpain, small subunit 1 [Source:MGI Symbol;Acc:MGI:88266]
28. Chchd2 ENSMUSG00000070493 249.22 2589.43 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
29. Elp5 ENSMUSG00000018565 249.22 2589.43 elongator acetyltransferase complex subunit 5 [Source:MGI Symbol;Acc:MGI:1859017]
30. Pkm ENSMUSG00000032294 249.22 2589.43 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
31. Sfrp1 ENSMUSG00000031548 249.22 2589.43 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
32. Tcf7l1 ENSMUSG00000055799 249.22 2589.43 transcription factor 7 like 1 (T cell specific, HMG box) [Source:MGI Symbol;Acc:MGI:1202876]
33. Tuba1b ENSMUSG00000023004 249.22 2589.43 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
34. Tubb5 ENSMUSG00000001525 249.22 2589.43 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
35. Cdkn1c ENSMUSG00000037664 199.37 2071.48 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
36. Col1a2 ENSMUSG00000029661 199.37 2071.48 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
37. Crabp1 ENSMUSG00000032291 199.37 2071.48 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
38. Ddx39b ENSMUSG00000019432 199.37 2071.48 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
39. Eif4h ENSMUSG00000040731 199.37 2071.48 eukaryotic translation initiation factor 4H [Source:MGI Symbol;Acc:MGI:1341822]
40. Gm5963 ENSMUSG00000052192 199.37 2071.48 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
41. Hnrnpc ENSMUSG00000060373 199.37 2071.48 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
42. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 199.37 2071.48 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
43. Igf2bp3 ENSMUSG00000029814 199.37 2071.48 insulin-like growth factor 2 mRNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1890359]
44. Ldha ENSMUSG00000063229 199.37 2071.48 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
45. Nedd4 ENSMUSG00000032216 199.37 2071.48 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
46. Pcbp1 ENSMUSG00000051695 199.37 2071.48 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
47. Pphln1 ENSMUSG00000036167 199.37 2071.48 periphilin 1 [Source:MGI Symbol;Acc:MGI:1917029]
48. Rad21 ENSMUSG00000022314 199.37 2071.48 RAD21 cohesin complex component [Source:MGI Symbol;Acc:MGI:108016]
49. Rpl32 ENSMUSG00000057841 199.37 2071.48 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
50. Rpl37 ENSMUSG00000041841 199.37 2071.48 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
51. Rpl4 ENSMUSG00000032399 199.37 2071.48 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
52. Rps26 ENSMUSG00000025362 199.37 2071.48 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
53. Rps4x ENSMUSG00000031320 199.37 2071.48 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
54. Son ENSMUSG00000022961 199.37 2071.48 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
55. Srsf3 ENSMUSG00000071172 199.37 2071.48 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
56. Tpm1 ENSMUSG00000032366 199.37 2071.48 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
57. Tpt1 ENSMUSG00000060126 199.37 2071.48 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
58. Usp14 ENSMUSG00000047879 199.37 2071.48 ubiquitin specific peptidase 14 [Source:MGI Symbol;Acc:MGI:1928898]
59. Wdr89 ENSMUSG00000045690 199.37 2071.48 WD repeat domain 89 [Source:MGI Symbol;Acc:MGI:1919588]
60. mt-Rnr1 ENSMUSG00000064337 199.37 2071.48 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
61. Actg1 ENSMUSG00000062825 149.53 1553.64 actin, gamma, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:87906]
62. Adh5 ENSMUSG00000028138 149.53 1553.64 alcohol dehydrogenase 5 (class III), chi polypeptide [Source:MGI Symbol;Acc:MGI:87929]
63. Anp32b ENSMUSG00000028333 149.53 1553.64 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
64. Arpc2 ENSMUSG00000006304 149.53 1553.64 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
65. Atp5e ENSMUSG00000016252 149.53 1553.64 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit [Source:MGI Symbol;Acc:MGI:1855697]
66. Bri3bp ENSMUSG00000037905 149.53 1553.64 Bri3 binding protein [Source:MGI Symbol;Acc:MGI:1924059]
67. Ccnb1 ENSMUSG00000041431 149.53 1553.64 cyclin B1 [Source:MGI Symbol;Acc:MGI:88302]
68. Cfl1 ENSMUSG00000056201 149.53 1553.64 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
69. Col3a1 ENSMUSG00000026043 149.53 1553.64 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
70. Dnmt1 ENSMUSG00000004099 149.53 1553.64 DNA methyltransferase (cytosine-5) 1 [Source:MGI Symbol;Acc:MGI:94912]
71. Flrt3 ENSMUSG00000051379 149.53 1553.64 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
72. Fubp1 ENSMUSG00000028034 149.53 1553.64 far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
73. Gm13936 ENSMUSG00000085444 149.53 1553.64 predicted gene 13936 [Source:MGI Symbol;Acc:MGI:3651878]
74. Hnrnpab ENSMUSG00000020358 149.53 1553.64 heterogeneous nuclear ribonucleoprotein A/B [Source:MGI Symbol;Acc:MGI:1330294]
75. Hsp90ab1 ENSMUSG00000023944 149.53 1553.64 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
76. Id2 ENSMUSG00000020644 149.53 1553.64 inhibitor of DNA binding 2 [Source:MGI Symbol;Acc:MGI:96397]
77. Katna1 ENSMUSG00000019794, ENSMUSG00000115937 149.53 1553.64 katanin p60 (ATPase-containing) subunit A1 [Source:MGI Symbol;Acc:MGI:1344353]
78. Klhdc2 ENSMUSG00000020978 149.53 1553.64 kelch domain containing 2 [Source:MGI Symbol;Acc:MGI:1916804]
79. Klhl6 ENSMUSG00000043008 149.53 1553.64 kelch-like 6 [Source:MGI Symbol;Acc:MGI:2686922]
80. Lima1 ENSMUSG00000023022 149.53 1553.64 LIM domain and actin binding 1 [Source:MGI Symbol;Acc:MGI:1920992]
81. Malat1 ENSMUSG00000092341 149.53 1553.64 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
82. Mlf2 ENSMUSG00000030120 149.53 1553.64 myeloid leukemia factor 2 [Source:MGI Symbol;Acc:MGI:1353554]
83. Myl6 ENSMUSG00000090841 149.53 1553.64 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
84. Pabpc4l ENSMUSG00000090919 149.53 1553.64 poly(A) binding protein, cytoplasmic 4-like [Source:MGI Symbol;Acc:MGI:3643087]
85. Pafah1b2 ENSMUSG00000003131 149.53 1553.64 platelet-activating factor acetylhydrolase, isoform 1b, subunit 2 [Source:MGI Symbol;Acc:MGI:108415]
86. Pbk ENSMUSG00000022033 149.53 1553.64 PDZ binding kinase [Source:MGI Symbol;Acc:MGI:1289156]
87. Ptges3 ENSMUSG00000071072 149.53 1553.64 prostaglandin E synthase 3 [Source:MGI Symbol;Acc:MGI:1929282]
88. Rpl37a ENSMUSG00000046330 149.53 1553.64 ribosomal protein L37a [Source:MGI Symbol;Acc:MGI:98068]
89. Rplp0 ENSMUSG00000067274 149.53 1553.64 ribosomal protein, large, P0 [Source:MGI Symbol;Acc:MGI:1927636]
90. Rps20 ENSMUSG00000028234 149.53 1553.64 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
91. Rps5 ENSMUSG00000012848 149.53 1553.64 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
92. Rps8 ENSMUSG00000047675 149.53 1553.64 ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
93. Rpsa ENSMUSG00000032518 149.53 1553.64 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
94. Rrm2 ENSMUSG00000020649 149.53 1553.64 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
95. Set ENSMUSG00000054766 149.53 1553.64 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
96. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 149.53 1553.64 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
97. Slc25a3 ENSMUSG00000061904 149.53 1553.64 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 [Source:MGI Symbol;Acc:MGI:1353498]
98. Srrm2 ENSMUSG00000039218 149.53 1553.64 serine/arginine repetitive matrix 2 [Source:MGI Symbol;Acc:MGI:1923206]
99. Tmem14c ENSMUSG00000021361 149.53 1553.64 transmembrane protein 14C [Source:MGI Symbol;Acc:MGI:1913404]
100. Tpx2 ENSMUSG00000027469 149.53 1553.64 TPX2, microtubule-associated [Source:MGI Symbol;Acc:MGI:1919369]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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