Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s64.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2912.70 30262.81 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2682.75 27873.64 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Rnr2 ENSMUSG00000064339 2248.40 23360.76 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Atp6 ENSMUSG00000064357 1737.40 18051.50 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd1 ENSMUSG00000064341 1533.00 15927.79 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. Actb ENSMUSG00000029580 1328.60 13804.09 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
7. mt-Co1 ENSMUSG00000064351 1277.50 13273.16 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Co2 ENSMUSG00000064354 1277.50 13273.16 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. Hbb-y ENSMUSG00000052187 1098.65 11414.92 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Nd4 ENSMUSG00000064363 1073.10 11149.46 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. H19 ENSMUSG00000000031 843.15 8760.29 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. Mdk ENSMUSG00000027239 792.05 8229.36 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Nd3 ENSMUSG00000064360 740.95 7698.43 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Igf2 ENSMUSG00000048583 689.85 7167.51 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Eef1a1 ENSMUSG00000037742 613.20 6371.12 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Hba-a1 ENSMUSG00000069919 587.65 6105.65 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
17. mt-Nd2 ENSMUSG00000064345 587.65 6105.65 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
18. Hmga2 ENSMUSG00000056758 511.00 5309.26 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Hba-x ENSMUSG00000055609 434.35 4512.87 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
20. Hbb-bh1 ENSMUSG00000052217 434.35 4512.87 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
21. Pkm ENSMUSG00000032294 383.25 3981.95 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
22. Set ENSMUSG00000054766 383.25 3981.95 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
23. Tuba1b ENSMUSG00000023004 357.70 3716.49 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Cfl1 ENSMUSG00000056201 332.15 3451.02 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Rpl37 ENSMUSG00000041841 306.60 3185.56 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
26. Ybx1 ENSMUSG00000028639 306.60 3185.56 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
27. mt-Nd5 ENSMUSG00000064367 306.60 3185.56 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
28. Rpsa ENSMUSG00000032518 281.05 2920.10 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Tubb5 ENSMUSG00000001525 281.05 2920.10 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. mt-Co3 ENSMUSG00000064358 281.05 2920.10 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
31. mt-Rnr1 ENSMUSG00000064337 281.05 2920.10 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
32. Gm13340 ENSMUSG00000083563 255.50 2654.63 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
33. Hsp90ab1 ENSMUSG00000023944 255.50 2654.63 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Rpl23 ENSMUSG00000071415 255.50 2654.63 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
35. 2810417H13Rik 229.95 2389.17 RIKEN cDNA 2810417H13 gene
36. Ago2 ENSMUSG00000036698 229.95 2389.17 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
37. Eif4g2 ENSMUSG00000005610 229.95 2389.17 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Hba-a2 ENSMUSG00000069917 229.95 2389.17 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
39. Ran ENSMUSG00000029430 229.95 2389.17 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
40. Rpl18a ENSMUSG00000045128 229.95 2389.17 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
41. Rplp1 ENSMUSG00000007892 229.95 2389.17 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
42. Ubb ENSMUSG00000019505 229.95 2389.17 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
43. Anp32b ENSMUSG00000028333 204.40 2123.71 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
44. Atp5d ENSMUSG00000003072 204.40 2123.71 ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit [Source:MGI Symbol;Acc:MGI:1913293]
45. Caprin1 ENSMUSG00000027184 204.40 2123.71 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
46. Cox8a ENSMUSG00000035885 204.40 2123.71 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
47. Fkbp1a ENSMUSG00000032966 204.40 2123.71 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
48. Gm15459 ENSMUSG00000100801 204.40 2123.71 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
49. Igfbp4 ENSMUSG00000017493 204.40 2123.71 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
50. Jund ENSMUSG00000071076, ENSMUSG00000110974 204.40 2123.71 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
51. Ngfrap1 204.40 2123.71 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
52. Sfrp1 ENSMUSG00000031548 204.40 2123.71 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
53. Ywhab ENSMUSG00000018326 204.40 2123.71 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Cdk4 ENSMUSG00000006728 178.85 1858.24 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
55. Chchd2 ENSMUSG00000070493 178.85 1858.24 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
56. Malat1 ENSMUSG00000092341 178.85 1858.24 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
57. Nedd4 ENSMUSG00000032216 178.85 1858.24 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
58. Npm1 ENSMUSG00000057113 178.85 1858.24 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
59. Rps26 ENSMUSG00000025362 178.85 1858.24 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
60. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 178.85 1858.24 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
61. Atp5g3 ENSMUSG00000018770 153.30 1592.78 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
62. Eef1b2 ENSMUSG00000025967 153.30 1592.78 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
63. Gars ENSMUSG00000029777 153.30 1592.78 glycyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:2449057]
64. Hnrnpc ENSMUSG00000060373 153.30 1592.78 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
65. Hsp90aa1 ENSMUSG00000021270 153.30 1592.78 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
66. Ift20 ENSMUSG00000001105 153.30 1592.78 intraflagellar transport 20 [Source:MGI Symbol;Acc:MGI:1915585]
67. Marcksl1 ENSMUSG00000047945 153.30 1592.78 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
68. Pabpc1 ENSMUSG00000022283 153.30 1592.78 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
69. Rpl4 ENSMUSG00000032399 153.30 1592.78 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
70. Rps20 ENSMUSG00000028234 153.30 1592.78 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
71. Top2a ENSMUSG00000020914 153.30 1592.78 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
72. Api5 ENSMUSG00000027193 127.75 1327.32 apoptosis inhibitor 5 [Source:MGI Symbol;Acc:MGI:1888993]
73. Col1a1 ENSMUSG00000001506 127.75 1327.32 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
74. Col3a1 ENSMUSG00000026043 127.75 1327.32 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
75. Crabp1 ENSMUSG00000032291 127.75 1327.32 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
76. Eif5a ENSMUSG00000078812 127.75 1327.32 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
77. Gm10076 ENSMUSG00000060143 127.75 1327.32 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
78. Gm14303 ENSMUSG00000081344 127.75 1327.32 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
79. Gm26917 ENSMUSG00000097971 127.75 1327.32 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
80. Gm5506 Gm5506 127.75 1327.32
81. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 127.75 1327.32 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
82. Ndufa12 ENSMUSG00000020022 127.75 1327.32 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
83. Pbx3 ENSMUSG00000038718 127.75 1327.32 pre B cell leukemia homeobox 3 [Source:MGI Symbol;Acc:MGI:97496]
84. Polr2m ENSMUSG00000032199 127.75 1327.32 polymerase (RNA) II (DNA directed) polypeptide M [Source:MGI Symbol;Acc:MGI:107282]
85. Prr12 ENSMUSG00000046574 127.75 1327.32 proline rich 12 [Source:MGI Symbol;Acc:MGI:2679002]
86. Rad21 ENSMUSG00000022314 127.75 1327.32 RAD21 cohesin complex component [Source:MGI Symbol;Acc:MGI:108016]
87. Rpl39-ps ENSMUSG00000036305 127.75 1327.32 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
88. Rps3a1 ENSMUSG00000028081 127.75 1327.32 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
89. Serbp1 ENSMUSG00000036371 127.75 1327.32 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
90. Slc25a5 ENSMUSG00000016319 127.75 1327.32 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
91. Son ENSMUSG00000022961 127.75 1327.32 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
92. Sub1 ENSMUSG00000022205 127.75 1327.32 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
93. Tmpo ENSMUSG00000019961 127.75 1327.32 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
94. U2af2 ENSMUSG00000030435 127.75 1327.32 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
95. Ywhae ENSMUSG00000020849 127.75 1327.32 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
96. Zfp503 ENSMUSG00000039081 127.75 1327.32 zinc finger protein 503 [Source:MGI Symbol;Acc:MGI:1353644]
97. Acta2 ENSMUSG00000035783 102.20 1061.85 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
98. Arl6ip1 ENSMUSG00000030654 102.20 1061.85 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
99. Atp5b ENSMUSG00000025393 102.20 1061.85 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [Source:MGI Symbol;Acc:MGI:107801]
100. Atp5c1 ENSMUSG00000025781 102.20 1061.85 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:MGI Symbol;Acc:MGI:1261437]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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