Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s63.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3251.84 33782.96 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2907.53 30205.96 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2735.37 28417.41 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2107.96 21899.33 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2058.23 21382.69 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1889.90 19633.93 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1201.27 12479.84 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Hbb-y ENSMUSG00000052187 1048.24 10890.03 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
9. mt-Nd2 ENSMUSG00000064345 1021.46 10611.82 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. H19 ENSMUSG00000000031 1017.64 10572.13 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. Actb ENSMUSG00000029580 1009.98 10492.56 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Nd3 ENSMUSG00000064360 738.36 7670.73 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Mdk ENSMUSG00000027239 612.11 6359.13 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Co3 ENSMUSG00000064358 589.16 6120.71 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. mt-Rnr2 ENSMUSG00000064339 585.33 6080.92 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. Igf2 ENSMUSG00000048583 562.38 5842.50 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Eef1a1 ENSMUSG00000037742 470.56 4888.59 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Rpsa ENSMUSG00000032518 413.18 4292.48 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Cfl1 ENSMUSG00000056201 397.87 4133.42 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
20. Hba-x ENSMUSG00000055609 397.87 4133.42 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
21. Hbb-bh1 ENSMUSG00000052217 394.05 4093.74 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
22. Hmga2 ENSMUSG00000056758 390.22 4053.95 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Hba-a1 ENSMUSG00000069919 382.57 3974.47 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
24. Gm13340 ENSMUSG00000083563 351.96 3656.47 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
25. Pkm ENSMUSG00000032294 344.31 3576.99 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. mt-Nd5 ENSMUSG00000064367 309.88 3219.30 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
27. Tuba1b ENSMUSG00000023004 275.45 2861.62 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Hsp90ab1 ENSMUSG00000023944 263.97 2742.35 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Npm1 ENSMUSG00000057113 256.32 2662.88 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
30. Rpl4 ENSMUSG00000032399 252.50 2623.19 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Tubb5 ENSMUSG00000001525 252.50 2623.19 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
32. Rpl37 ENSMUSG00000041841 218.06 2265.40 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
33. Rps26 ENSMUSG00000025362 210.41 2185.92 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
34. Tpt1 ENSMUSG00000060126 210.41 2185.92 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Ywhab ENSMUSG00000018326 210.41 2185.92 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
36. Hnrnpc ENSMUSG00000060373 202.76 2106.45 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
37. Chchd2 ENSMUSG00000070493 195.11 2026.97 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Hba-a2 ENSMUSG00000069917 195.11 2026.97 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
39. Ubb ENSMUSG00000019505 191.28 1987.18 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
40. Crabp1 ENSMUSG00000032291 183.63 1907.71 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
41. Rpl18a ENSMUSG00000045128 179.81 1868.02 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
42. Gm10800 ENSMUSG00000075014 175.98 1828.23 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
43. Rps20 ENSMUSG00000028234 175.98 1828.23 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
44. Gm14303 ENSMUSG00000081344 172.16 1788.55 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
45. U2af2 ENSMUSG00000030435 172.16 1788.55 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
46. mt-Rnr1 ENSMUSG00000064337 172.16 1788.55 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
47. Eef1b2 ENSMUSG00000025967 168.33 1748.76 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. Paics ENSMUSG00000029247 168.33 1748.76 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
49. Hsp90aa1 ENSMUSG00000021270 156.85 1629.49 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
50. Rpl32 ENSMUSG00000057841 156.85 1629.49 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
51. Eif5a ENSMUSG00000078812 153.03 1589.81 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
52. Grb10 ENSMUSG00000020176 153.03 1589.81 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
53. Myl6 ENSMUSG00000090841 149.20 1550.02 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
54. Eif4g2 ENSMUSG00000005610 145.38 1510.33 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
55. Nedd4 ENSMUSG00000032216 145.38 1510.33 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
56. Rps4x ENSMUSG00000031320 145.38 1510.33 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
57. Rps5 ENSMUSG00000012848 145.38 1510.33 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
58. Banf1 ENSMUSG00000024844 141.55 1470.55 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
59. Marcks ENSMUSG00000069662 141.55 1470.55 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
60. Ngfrap1 137.73 1430.86 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
61. Set ENSMUSG00000054766 137.73 1430.86 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
62. Rpl41 ENSMUSG00000093674 133.90 1391.07 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
63. Tecr ENSMUSG00000031708 133.90 1391.07 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
64. Atp5g3 ENSMUSG00000018770 130.07 1351.28 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
65. Fkbp1a ENSMUSG00000032966 130.07 1351.28 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
66. Gm5805 ENSMUSG00000061848 126.25 1311.60 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
67. Ndufa12 ENSMUSG00000020022 126.25 1311.60 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
68. Rpl23 ENSMUSG00000071415 126.25 1311.60 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
69. Sfrp1 ENSMUSG00000031548 126.25 1311.60 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
70. Tmpo ENSMUSG00000019961 126.25 1311.60 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
71. Ran ENSMUSG00000029430 122.42 1271.81 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
72. Rplp1 ENSMUSG00000007892 122.42 1271.81 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
73. Ldha ENSMUSG00000063229 118.60 1232.12 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
74. Rpl8 ENSMUSG00000003970 118.60 1232.12 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
75. Trim28 ENSMUSG00000005566 118.60 1232.12 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
76. Rpl39-ps ENSMUSG00000036305 114.77 1192.33 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
77. 2810417H13Rik 110.95 1152.65 RIKEN cDNA 2810417H13 gene
78. Hnrnpa0 ENSMUSG00000007836 110.95 1152.65 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
79. Hspe1 ENSMUSG00000073676 110.95 1152.65 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
80. Lamp1 ENSMUSG00000031447 110.95 1152.65 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
81. Pabpc1 ENSMUSG00000022283 110.95 1152.65 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
82. Rps15 ENSMUSG00000063457 107.12 1112.86 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
83. Rrm2 ENSMUSG00000020649 107.12 1112.86 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
84. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 107.12 1112.86 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
85. Hmgn1 ENSMUSG00000040681 103.29 1073.07 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
86. Gm10073 ENSMUSG00000060019 99.47 1033.38 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
87. Pcbp1 ENSMUSG00000051695 99.47 1033.38 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
88. Peg3 ENSMUSG00000002265 99.47 1033.38 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
89. Rps3a1 ENSMUSG00000028081 99.47 1033.38 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
90. Col3a1 ENSMUSG00000026043 95.64 993.59 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
91. Cox8a ENSMUSG00000035885 95.64 993.59 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
92. Gm9846 Gm9846 95.64 993.59
93. Wbp5 95.64 993.59 WW domain binding protein 5
94. Ybx1 ENSMUSG00000028639 95.64 993.59 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
95. Cdk4 ENSMUSG00000006728 91.82 953.91 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
96. Ddx39b ENSMUSG00000019432 91.82 953.91 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
97. Ddx5 ENSMUSG00000020719 91.82 953.91 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
98. Sepw1 91.82 953.91 selenoprotein W, muscle 1
99. Fkbp4 ENSMUSG00000030357 87.99 914.12 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
100. Hnrnpa2b1 ENSMUSG00000004980 87.99 914.12 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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