Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s62.

Sample reads: 96,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3507.17 36436.89 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3388.99 35209.09 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 2653.25 27565.29 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Co2 ENSMUSG00000064354 2510.29 26080.05 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 2289.19 23782.98 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Atp6 ENSMUSG00000064357 2216.76 23030.49 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co1 ENSMUSG00000064351 1124.58 11683.55 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Actb ENSMUSG00000029580 953.03 9901.27 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
9. mt-Nd3 ENSMUSG00000064360 863.45 8970.60 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. H19 ENSMUSG00000000031 838.67 8713.16 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Nd2 ENSMUSG00000064345 815.80 8475.56 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. Mdk ENSMUSG00000027239 760.52 7901.24 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Rnr2 ENSMUSG00000064339 735.74 7643.79 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. Eef1a1 ENSMUSG00000037742 632.81 6574.43 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Igf2 ENSMUSG00000048583 539.42 5604.17 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Hmga2 ENSMUSG00000056758 430.77 4475.38 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. Rpsa ENSMUSG00000032518 423.15 4396.21 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. mt-Co3 ENSMUSG00000064358 398.37 4138.77 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Hbb-y ENSMUSG00000052187 356.43 3703.04 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Cfl1 ENSMUSG00000056201 327.84 3406.01 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. mt-Nd5 ENSMUSG00000064367 324.03 3366.43 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Gm10800 ENSMUSG00000075014 316.41 3287.26 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
23. Pkm ENSMUSG00000032294 301.16 3128.83 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Tubb5 ENSMUSG00000001525 282.10 2930.81 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Tuba1b ENSMUSG00000023004 276.38 2871.38 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Gm13340 ENSMUSG00000083563 270.66 2811.96 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
27. Rpl18a ENSMUSG00000045128 242.07 2514.93 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
28. Npm1 ENSMUSG00000057113 240.16 2495.08 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
29. Rpl4 ENSMUSG00000032399 221.10 2297.06 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Rps20 ENSMUSG00000028234 205.86 2138.73 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
31. Rps26 ENSMUSG00000025362 202.04 2099.05 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
32. Grb10 ENSMUSG00000020176 200.14 2079.31 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
33. Eif5a ENSMUSG00000078812 198.23 2059.46 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
34. Hba-x ENSMUSG00000055609 198.23 2059.46 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
35. Ubb ENSMUSG00000019505 196.33 2039.72 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
36. Tpt1 ENSMUSG00000060126 194.42 2019.88 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. Hsp90ab1 ENSMUSG00000023944 192.51 2000.04 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Chchd2 ENSMUSG00000070493 182.98 1901.03 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Eif4g2 ENSMUSG00000005610 182.98 1901.03 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
40. Atp5g3 ENSMUSG00000018770 181.08 1881.29 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
41. Set ENSMUSG00000054766 179.17 1861.44 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
42. mt-Rnr1 ENSMUSG00000064337 177.26 1841.60 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
43. U2af2 ENSMUSG00000030435 173.45 1802.02 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
44. Eef1b2 ENSMUSG00000025967 171.55 1782.28 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
45. Nedd4 ENSMUSG00000032216 167.73 1742.59 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
46. Ywhab ENSMUSG00000018326 167.73 1742.59 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
47. Cox8a ENSMUSG00000035885 165.83 1722.85 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
48. Hba-a1 ENSMUSG00000069919 165.83 1722.85 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
49. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 162.02 1683.27 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
50. Crabp1 ENSMUSG00000032291 160.11 1663.42 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
51. Hnrnpc ENSMUSG00000060373 160.11 1663.42 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
52. Rplp1 ENSMUSG00000007892 158.20 1643.58 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
53. Fkbp1a ENSMUSG00000032966 148.67 1544.57 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Ago2 ENSMUSG00000036698 144.86 1504.99 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
55. Pabpc1 ENSMUSG00000022283 141.05 1465.40 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
56. Paics ENSMUSG00000029247 139.14 1445.56 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
57. Rps5 ENSMUSG00000012848 137.24 1425.82 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
58. Ngfrap1 135.33 1405.98 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
59. Peg3 ENSMUSG00000002265 133.42 1386.13 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
60. Rpl23 ENSMUSG00000071415 131.52 1366.39 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
61. Gm14303 ENSMUSG00000081344 129.61 1346.55 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
62. Hmgn1 ENSMUSG00000040681 129.61 1346.55 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
63. Ybx1 ENSMUSG00000028639 129.61 1346.55 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
64. Ran ENSMUSG00000029430 127.71 1326.81 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
65. Gm14586 ENSMUSG00000083621 125.80 1306.97 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
66. Gm5805 ENSMUSG00000061848 125.80 1306.97 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
67. Banf1 ENSMUSG00000024844 123.89 1287.12 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
68. Trim28 ENSMUSG00000005566 123.89 1287.12 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
69. Col1a1 ENSMUSG00000001506 121.99 1267.39 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
70. Hba-a2 ENSMUSG00000069917 121.99 1267.39 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
71. Ldha ENSMUSG00000063229 121.99 1267.39 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
72. Pcbp1 ENSMUSG00000051695 121.99 1267.39 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
73. Rpl8 ENSMUSG00000003970 120.08 1247.54 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
74. Eef2 ENSMUSG00000034994 114.36 1188.12 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
75. Hbb-bh1 ENSMUSG00000052217 114.36 1188.12 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
76. Rpl39-ps ENSMUSG00000036305 114.36 1188.12 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
77. Sf3b4 ENSMUSG00000068856 110.55 1148.53 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
78. Sfrp1 ENSMUSG00000031548 110.55 1148.53 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
79. Lamp1 ENSMUSG00000031447 108.65 1128.79 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
80. Wbp5 108.65 1128.79 WW domain binding protein 5
81. Hsp90aa1 ENSMUSG00000021270 106.74 1108.95 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
82. Ndufa12 ENSMUSG00000020022 106.74 1108.95 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
83. Rps9 ENSMUSG00000006333 106.74 1108.95 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
84. Rrm2 ENSMUSG00000020649 106.74 1108.95 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
85. Sub1 ENSMUSG00000022205 106.74 1108.95 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
86. Pbx1 ENSMUSG00000052534 104.83 1089.11 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
87. Gm5963 ENSMUSG00000052192 101.02 1049.52 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
88. Hnrnpa2b1 ENSMUSG00000004980 101.02 1049.52 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
89. Tecr ENSMUSG00000031708 101.02 1049.52 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
90. Rps3a1 ENSMUSG00000028081 99.12 1029.78 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
91. Ywhae ENSMUSG00000020849 99.12 1029.78 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
92. Ddx39b ENSMUSG00000019432 95.30 990.10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
93. Gm10073 ENSMUSG00000060019 95.30 990.10 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
94. Fscn1 ENSMUSG00000029581 93.40 970.36 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
95. Rpl37 ENSMUSG00000041841 93.40 970.36 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
96. Gm9846 Gm9846 91.49 950.51
97. Rpl26 ENSMUSG00000060938 91.49 950.51 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
98. Col3a1 ENSMUSG00000026043 89.59 930.77 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
99. Fkbp4 ENSMUSG00000030357 89.59 930.77 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
100. Myl6 ENSMUSG00000090841 89.59 930.77 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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