Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s61.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4183.21 43469.00 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2838.37 29494.36 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Co2 ENSMUSG00000064354 2722.72 28292.61 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Nd1 ENSMUSG00000064341 2600.46 27022.17 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Atp6 ENSMUSG00000064357 2577.33 26781.81 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Nd4 ENSMUSG00000064363 2134.56 22180.86 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1298.58 13493.94 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 1070.59 11124.82 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Nd2 ENSMUSG00000064345 1014.41 10541.04 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. H19 ENSMUSG00000000031 911.98 9476.66 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. Actb ENSMUSG00000029580 902.07 9373.68 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Rnr2 ENSMUSG00000064339 796.33 8274.91 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
13. Mdk ENSMUSG00000027239 726.94 7553.85 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Eef1a1 ENSMUSG00000037742 687.29 7141.84 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Co3 ENSMUSG00000064358 482.42 5012.97 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Igf2 ENSMUSG00000048583 469.21 4875.70 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm13340 ENSMUSG00000083563 429.56 4463.69 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Rpsa ENSMUSG00000032518 422.95 4395.00 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Hmga2 ENSMUSG00000056758 393.21 4085.96 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Hbb-y ENSMUSG00000052187 386.60 4017.28 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. mt-Nd5 ENSMUSG00000064367 373.38 3879.90 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Tuba1b ENSMUSG00000023004 353.56 3673.95 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Pkm ENSMUSG00000032294 323.82 3364.91 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Rps26 ENSMUSG00000025362 317.21 3296.22 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
25. Tubb5 ENSMUSG00000001525 317.21 3296.22 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Npm1 ENSMUSG00000057113 310.60 3227.54 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Gm10800 ENSMUSG00000075014 284.17 2952.90 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
28. Cfl1 ENSMUSG00000056201 277.56 2884.21 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
29. Rpl18a ENSMUSG00000045128 244.52 2540.88 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
30. Chchd2 ENSMUSG00000070493 218.08 2266.14 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Rps20 ENSMUSG00000028234 208.17 2163.16 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
32. Rps5 ENSMUSG00000012848 208.17 2163.16 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
33. Eef1b2 ENSMUSG00000025967 201.56 2094.47 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
34. Ngfrap1 198.26 2060.18 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
35. Rpl4 ENSMUSG00000032399 194.95 2025.78 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
36. Set ENSMUSG00000054766 191.65 1991.49 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
37. Tpt1 ENSMUSG00000060126 191.65 1991.49 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Nedd4 ENSMUSG00000032216 185.04 1922.81 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
39. Rplp1 ENSMUSG00000007892 181.74 1888.52 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
40. Rpl23 ENSMUSG00000071415 165.21 1716.75 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
41. Atp5g3 ENSMUSG00000018770 158.61 1648.16 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
42. Gm5805 ENSMUSG00000061848 158.61 1648.16 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
43. Ubb ENSMUSG00000019505 152.00 1579.48 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
44. Ywhab ENSMUSG00000018326 152.00 1579.48 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
45. mt-Rnr1 ENSMUSG00000064337 152.00 1579.48 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
46. Grb10 ENSMUSG00000020176 148.69 1545.08 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
47. Rpl37 ENSMUSG00000041841 148.69 1545.08 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
48. U2af2 ENSMUSG00000030435 148.69 1545.08 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
49. Cox8a ENSMUSG00000035885 145.39 1510.79 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
50. Crabp1 ENSMUSG00000032291 145.39 1510.79 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
51. Rps3a1 ENSMUSG00000028081 145.39 1510.79 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
52. Sfrp1 ENSMUSG00000031548 145.39 1510.79 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
53. Eef2 ENSMUSG00000034994 142.08 1476.40 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
54. Hba-x ENSMUSG00000055609 142.08 1476.40 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
55. Pabpc1 ENSMUSG00000022283 142.08 1476.40 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
56. Pbx1 ENSMUSG00000052534 142.08 1476.40 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
57. Banf1 ENSMUSG00000024844 138.78 1442.10 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
58. Trim28 ENSMUSG00000005566 138.78 1442.10 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
59. Fkbp1a ENSMUSG00000032966 135.48 1407.81 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
60. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 135.48 1407.81 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
61. Hsp90ab1 ENSMUSG00000023944 132.17 1373.42 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
62. Rpl32 ENSMUSG00000057841 132.17 1373.42 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
63. Gm14303 ENSMUSG00000081344 128.87 1339.13 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
64. Gm14586 ENSMUSG00000083621 128.87 1339.13 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
65. Hnrnpc ENSMUSG00000060373 128.87 1339.13 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
66. Hsp90aa1 ENSMUSG00000021270 128.87 1339.13 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
67. Eif5a ENSMUSG00000078812 125.56 1304.73 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
68. Myl6 ENSMUSG00000090841 122.26 1270.44 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
69. Ybx1 ENSMUSG00000028639 122.26 1270.44 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
70. Eif4g2 ENSMUSG00000005610 118.95 1236.05 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
71. Kpnb1 ENSMUSG00000001440 118.95 1236.05 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
72. Peg3 ENSMUSG00000002265 115.65 1201.75 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
73. Rpl39-ps ENSMUSG00000036305 115.65 1201.75 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
74. Rps4x ENSMUSG00000031320 115.65 1201.75 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
75. Col3a1 ENSMUSG00000026043 105.74 1098.78 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
76. Gm5963 ENSMUSG00000052192 105.74 1098.78 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
77. Hba-a1 ENSMUSG00000069919 105.74 1098.78 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
78. Lamp1 ENSMUSG00000031447 105.74 1098.78 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
79. Rpl8 ENSMUSG00000003970 105.74 1098.78 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
80. Tecr ENSMUSG00000031708 105.74 1098.78 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
81. Hba-a2 ENSMUSG00000069917 102.43 1064.38 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
82. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 102.43 1064.38 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
83. Ldha ENSMUSG00000063229 102.43 1064.38 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
84. Rpl26 ENSMUSG00000060938 102.43 1064.38 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
85. Ywhaz ENSMUSG00000022285 102.43 1064.38 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
86. 2810417H13Rik 99.13 1030.09 RIKEN cDNA 2810417H13 gene
87. Ddx39b ENSMUSG00000019432 99.13 1030.09 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
88. Prdx1 ENSMUSG00000028691 99.13 1030.09 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
89. Rps15 ENSMUSG00000063457 99.13 1030.09 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
90. Meg3 ENSMUSG00000021268 95.82 995.69 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
91. Pcbp1 ENSMUSG00000051695 95.82 995.69 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
92. Rrm2 ENSMUSG00000020649 95.82 995.69 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
93. Caprin1 ENSMUSG00000027184 92.52 961.40 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
94. Cdk4 ENSMUSG00000006728 92.52 961.40 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
95. Hnrnpa2b1 ENSMUSG00000004980 92.52 961.40 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
96. Ran ENSMUSG00000029430 92.52 961.40 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
97. Son ENSMUSG00000022961 92.52 961.40 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
98. Ago2 ENSMUSG00000036698 89.22 927.11 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
99. Hbb-bh1 ENSMUSG00000052217 89.22 927.11 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
100. Hmgn1 ENSMUSG00000040681 89.22 927.11 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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