Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s6.

Sample reads: 96,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3233.62 33600.64 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2961.30 30770.95 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2204.14 22903.28 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2007.88 20863.94 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 1830.78 19023.69 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1692.01 17581.72 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. Hbb-y ENSMUSG00000052187 1102.65 11457.67 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
8. mt-Co1 ENSMUSG00000064351 988.84 10275.07 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Actb ENSMUSG00000029580 732.78 7614.34 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Nd3 ENSMUSG00000064360 665.42 6914.40 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Eef1a1 ENSMUSG00000037742 590.52 6136.11 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Nd2 ENSMUSG00000064345 543.49 5647.42 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. mt-Rnr2 ENSMUSG00000064339 510.97 5309.50 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. Rpsa ENSMUSG00000032518 465.68 4838.89 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Mdk ENSMUSG00000027239 433.74 4507.00 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Co3 ENSMUSG00000064358 420.97 4374.31 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Pkm ENSMUSG00000032294 378.58 3933.84 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
18. Hba-a1 ENSMUSG00000069919 373.36 3879.59 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
19. Hba-x ENSMUSG00000055609 358.84 3728.72 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
20. Gm10800 ENSMUSG00000075014 357.10 3710.64 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
21. Hbb-bh1 ENSMUSG00000052217 357.10 3710.64 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
22. Cfl1 ENSMUSG00000056201 353.61 3674.37 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Tuba1b ENSMUSG00000023004 350.13 3638.21 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Gm13340 ENSMUSG00000083563 317.61 3300.29 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
25. Npm1 ENSMUSG00000057113 317.61 3300.29 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Tubb5 ENSMUSG00000001525 281.61 2926.22 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Rpl4 ENSMUSG00000032399 268.26 2787.50 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
28. Rplp1 ENSMUSG00000007892 243.87 2534.06 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
29. Hnrnpc ENSMUSG00000060373 243.29 2528.03 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
30. Tpt1 ENSMUSG00000060126 240.39 2497.90 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Rps26 ENSMUSG00000025362 238.65 2479.82 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
32. Tubb2b ENSMUSG00000045136 238.07 2473.79 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
33. mt-Nd5 ENSMUSG00000064367 230.52 2395.34 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
34. Eif5a ENSMUSG00000078812 227.61 2365.10 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Rrm2 ENSMUSG00000020649 224.71 2334.97 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
36. H19 ENSMUSG00000000031 220.07 2286.75 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
37. Atp5g3 ENSMUSG00000018770 218.90 2274.60 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
38. Hba-a2 ENSMUSG00000069917 211.36 2196.25 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
39. Set ENSMUSG00000054766 200.90 2087.56 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
40. Rps20 ENSMUSG00000028234 199.74 2075.50 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Ran ENSMUSG00000029430 199.16 2069.48 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
42. Ubb ENSMUSG00000019505 193.36 2009.21 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
43. Ybx1 ENSMUSG00000028639 193.36 2009.21 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
44. Hsp90aa1 ENSMUSG00000021270 188.71 1960.89 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
45. Chchd2 ENSMUSG00000070493 182.32 1894.49 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Hsp90ab1 ENSMUSG00000023944 180.00 1870.39 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
47. Nedd4 ENSMUSG00000032216 178.84 1858.33 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
48. Eif4g2 ENSMUSG00000005610 178.26 1852.30 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
49. Banf1 ENSMUSG00000024844 175.36 1822.17 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
50. U2af2 ENSMUSG00000030435 175.36 1822.17 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
51. Crabp1 ENSMUSG00000032291 170.71 1773.85 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
52. Eef1b2 ENSMUSG00000025967 170.71 1773.85 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
53. Rpl18a ENSMUSG00000045128 170.13 1767.83 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
54. Ldha ENSMUSG00000063229 166.07 1725.64 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
55. Rpl37 ENSMUSG00000041841 164.90 1713.48 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
56. Pabpc1 ENSMUSG00000022283 160.26 1665.27 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
57. Fkbp1a ENSMUSG00000032966 158.52 1647.19 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
58. Tmsb4x ENSMUSG00000049775 150.97 1568.73 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
59. Cox8a ENSMUSG00000035885 149.23 1550.65 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
60. Rpl39-ps ENSMUSG00000036305 146.32 1520.42 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
61. Rpl23 ENSMUSG00000071415 144.58 1502.33 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
62. Ndufa12 ENSMUSG00000020022 142.84 1484.25 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
63. Paics ENSMUSG00000029247 142.26 1478.23 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
64. Rps5 ENSMUSG00000012848 141.10 1466.17 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
65. Pcbp1 ENSMUSG00000051695 139.94 1454.12 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
66. Rpl32 ENSMUSG00000057841 135.29 1405.80 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
67. Gm14303 ENSMUSG00000081344 133.55 1387.72 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
68. Gm10073 ENSMUSG00000060019 132.97 1381.70 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
69. Rps4x ENSMUSG00000031320 127.74 1327.35 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
70. Trp53i11 ENSMUSG00000068735 127.74 1327.35 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
71. Grb10 ENSMUSG00000020176 126.58 1315.30 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
72. Fscn1 ENSMUSG00000029581 121.94 1267.08 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
73. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 120.19 1248.90 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
74. Anp32b ENSMUSG00000028333 117.87 1224.79 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
75. Ywhae ENSMUSG00000020849 117.87 1224.79 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
76. Rpl8 ENSMUSG00000003970 117.29 1218.76 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
77. Gm5963 ENSMUSG00000052192 116.71 1212.74 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
78. Tecr ENSMUSG00000031708 114.97 1194.66 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
79. Trim28 ENSMUSG00000005566 114.97 1194.66 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
80. Tuba1a ENSMUSG00000072235 114.97 1194.66 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
81. Ddx39b ENSMUSG00000019432 114.39 1188.63 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
82. Rpl41 ENSMUSG00000093674 111.48 1158.39 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
83. Ywhab ENSMUSG00000018326 110.90 1152.37 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
84. Gm15459 ENSMUSG00000100801 109.16 1134.28 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
85. Hmgn1 ENSMUSG00000040681 106.26 1104.15 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
86. Gm14586 ENSMUSG00000083621 104.52 1086.07 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
87. 2810417H13Rik 103.94 1080.04 RIKEN cDNA 2810417H13 gene
88. Hnrnpa0 ENSMUSG00000007836 101.61 1055.83 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
89. Ccnd2 ENSMUSG00000000184 100.45 1043.78 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
90. Gm9846 Gm9846 98.71 1025.70
91. Cdk4 ENSMUSG00000006728 97.55 1013.64 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
92. Msi1 ENSMUSG00000054256 96.97 1007.62 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
93. Eef2 ENSMUSG00000034994 96.39 1001.59 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
94. Srsf3 ENSMUSG00000071172 95.81 995.56 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
95. Rps3a1 ENSMUSG00000028081 95.23 989.54 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
96. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 93.48 971.35 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
97. Lamp1 ENSMUSG00000031447 92.90 965.33 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
98. Pa2g4 ENSMUSG00000025364 92.90 965.33 proliferation-associated 2G4 [Source:MGI Symbol;Acc:MGI:894684]
99. Rpl26 ENSMUSG00000060938 92.32 959.30 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
100. Erdr1 91.74 953.27 erythroid differentiation regulator 1, transcript variant 1, non-coding
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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