Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s59.

Sample reads: 96,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3386.92 35190.22 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2826.27 29365.05 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Co2 ENSMUSG00000064354 2231.07 23180.90 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Nd1 ENSMUSG00000064341 2065.95 21465.30 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Atp6 ENSMUSG00000064357 1839.38 19111.23 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Rnr2 ENSMUSG00000064339 1282.58 13326.05 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
7. mt-Nd4 ENSMUSG00000064363 1259.54 13086.67 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
8. mt-Co1 ENSMUSG00000064351 983.05 10213.93 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. H19 ENSMUSG00000000031 875.53 9096.79 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Actb ENSMUSG00000029580 860.17 8937.20 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd3 ENSMUSG00000064360 848.65 8817.50 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 656.65 6822.62 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Igf2 ENSMUSG00000048583 629.77 6543.33 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Mdk ENSMUSG00000027239 526.09 5466.09 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Hbb-y ENSMUSG00000052187 499.21 5186.81 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. Eef1a1 ENSMUSG00000037742 480.01 4987.32 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Hmga2 ENSMUSG00000056758 453.13 4708.04 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. Rpsa ENSMUSG00000032518 395.52 4109.47 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Npm1 ENSMUSG00000057113 360.96 3750.39 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. mt-Co3 ENSMUSG00000064358 360.96 3750.39 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
21. Pkm ENSMUSG00000032294 353.28 3670.59 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
22. Tuba1b ENSMUSG00000023004 307.20 3191.82 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Gm10800 ENSMUSG00000075014 303.36 3151.92 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
24. mt-Rnr1 ENSMUSG00000064337 291.84 3032.23 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
25. Cfl1 ENSMUSG00000056201 288.00 2992.33 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. mt-Nd5 ENSMUSG00000064367 288.00 2992.33 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
27. Rpl4 ENSMUSG00000032399 276.48 2872.64 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
28. Gm13340 ENSMUSG00000083563 272.64 2832.74 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
29. Rpl18a ENSMUSG00000045128 249.60 2593.35 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
30. Hbb-bh1 ENSMUSG00000052217 245.76 2553.46 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
31. Hba-a1 ENSMUSG00000069919 241.92 2513.56 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
32. Tubb5 ENSMUSG00000001525 234.24 2433.76 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
33. Rps26 ENSMUSG00000025362 230.40 2393.86 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
34. Hsp90ab1 ENSMUSG00000023944 218.88 2274.17 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Ubb ENSMUSG00000019505 211.20 2194.38 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
36. Hnrnpc ENSMUSG00000060373 203.52 2114.58 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
37. Tpt1 ENSMUSG00000060126 199.68 2074.68 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Eef1b2 ENSMUSG00000025967 195.84 2034.78 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
39. Rps20 ENSMUSG00000028234 195.84 2034.78 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Chchd2 ENSMUSG00000070493 192.00 1994.89 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Rpl23 ENSMUSG00000071415 192.00 1994.89 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Ago2 ENSMUSG00000036698 184.32 1915.09 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
43. Hba-x ENSMUSG00000055609 184.32 1915.09 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
44. Set ENSMUSG00000054766 184.32 1915.09 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
45. Ngfrap1 180.48 1875.19 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
46. Rpl37 ENSMUSG00000041841 180.48 1875.19 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
47. U2af2 ENSMUSG00000030435 180.48 1875.19 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
48. Grb10 ENSMUSG00000020176 176.64 1835.30 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
49. Nedd4 ENSMUSG00000032216 176.64 1835.30 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
50. Pbx1 ENSMUSG00000052534 176.64 1835.30 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
51. Eif5a ENSMUSG00000078812 172.80 1795.40 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
52. Rpl32 ENSMUSG00000057841 172.80 1795.40 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
53. Pabpc1 ENSMUSG00000022283 168.96 1755.50 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
54. Ran ENSMUSG00000029430 168.96 1755.50 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
55. Rps4x ENSMUSG00000031320 168.96 1755.50 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Rps5 ENSMUSG00000012848 168.96 1755.50 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
57. Hba-a2 ENSMUSG00000069917 165.12 1715.60 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
58. Peg3 ENSMUSG00000002265 165.12 1715.60 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
59. Rplp1 ENSMUSG00000007892 165.12 1715.60 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
60. Ywhab ENSMUSG00000018326 165.12 1715.60 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
61. Hsp90aa1 ENSMUSG00000021270 157.44 1635.81 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
62. Rpl39-ps ENSMUSG00000036305 149.76 1556.01 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
63. Ybx1 ENSMUSG00000028639 149.76 1556.01 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
64. Gm5805 ENSMUSG00000061848 145.92 1516.11 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
65. Rpl41 ENSMUSG00000093674 145.92 1516.11 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
66. Trim28 ENSMUSG00000005566 145.92 1516.11 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
67. Eif4g2 ENSMUSG00000005610 142.08 1476.22 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
68. Sfrp1 ENSMUSG00000031548 142.08 1476.22 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
69. Gm14586 ENSMUSG00000083621 138.24 1436.32 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
70. Gm5963 ENSMUSG00000052192 130.56 1356.52 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
71. Wbp5 130.56 1356.52 WW domain binding protein 5
72. Fkbp1a ENSMUSG00000032966 126.72 1316.63 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
73. 2810417H13Rik 122.88 1276.73 RIKEN cDNA 2810417H13 gene
74. Crabp1 ENSMUSG00000032291 122.88 1276.73 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
75. Gpc3 ENSMUSG00000055653 119.04 1236.83 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
76. Rpl13a ENSMUSG00000074129 119.04 1236.83 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
77. Rps3a1 ENSMUSG00000028081 119.04 1236.83 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
78. Anp32b ENSMUSG00000028333 115.20 1196.93 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
79. Cox8a ENSMUSG00000035885 115.20 1196.93 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
80. Gm10073 ENSMUSG00000060019 115.20 1196.93 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
81. Lamp1 ENSMUSG00000031447 115.20 1196.93 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
82. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 115.20 1196.93 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
83. Gm14303 ENSMUSG00000081344 111.36 1157.03 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
84. Gm17132 ENSMUSG00000061331 111.36 1157.03 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
85. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 111.36 1157.03 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
86. Ldha ENSMUSG00000063229 111.36 1157.03 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
87. Rrm2 ENSMUSG00000020649 111.36 1157.03 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
88. Tmpo ENSMUSG00000019961 111.36 1157.03 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
89. Eef1g ENSMUSG00000071644 107.52 1117.14 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
90. Gm8292 ENSMUSG00000100215 107.52 1117.14 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
91. Ndufa12 ENSMUSG00000020022 107.52 1117.14 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
92. Atp5g3 ENSMUSG00000018770 103.68 1077.24 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
93. Cdk4 ENSMUSG00000006728 103.68 1077.24 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
94. Pcbp1 ENSMUSG00000051695 103.68 1077.24 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
95. Serbp1 ENSMUSG00000036371 103.68 1077.24 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
96. Banf1 ENSMUSG00000024844 99.84 1037.34 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
97. H3f3b ENSMUSG00000016559 99.84 1037.34 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
98. Meg3 ENSMUSG00000021268 99.84 1037.34 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
99. Myl6 ENSMUSG00000090841 99.84 1037.34 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
100. Rpl8 ENSMUSG00000003970 99.84 1037.34 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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