Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s58.

Sample reads: 96,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3657.89 38005.83 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3306.13 34351.01 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 2905.86 30192.16 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Co2 ENSMUSG00000064354 2276.87 23656.90 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Atp6 ENSMUSG00000064357 2198.89 22846.68 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Nd4 ENSMUSG00000064363 1914.72 19894.12 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Nd2 ENSMUSG00000064345 1079.52 11216.32 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
8. mt-Rnr2 ENSMUSG00000064339 1011.94 10514.15 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Co1 ENSMUSG00000064351 951.29 9883.99 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Actb ENSMUSG00000029580 887.18 9217.89 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. Mdk ENSMUSG00000027239 790.14 8209.63 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. mt-Nd3 ENSMUSG00000064360 745.09 7741.56 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. H19 ENSMUSG00000000031 701.77 7291.46 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Hmga2 ENSMUSG00000056758 649.79 6751.38 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
15. Eef1a1 ENSMUSG00000037742 535.43 5563.17 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 436.66 4536.94 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Rpsa ENSMUSG00000032518 369.08 3834.78 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. mt-Nd5 ENSMUSG00000064367 360.42 3744.80 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Gm10800 ENSMUSG00000075014 355.22 3690.77 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
20. Hbb-y ENSMUSG00000052187 355.22 3690.77 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. Npm1 ENSMUSG00000057113 336.16 3492.73 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. mt-Co3 ENSMUSG00000064358 330.96 3438.71 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
23. Pkm ENSMUSG00000032294 304.97 3168.67 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Gm13340 ENSMUSG00000083563 275.51 2862.58 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
25. Tuba1b ENSMUSG00000023004 266.85 2772.60 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. mt-Rnr1 ENSMUSG00000064337 261.65 2718.57 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
27. Cfl1 ENSMUSG00000056201 252.99 2628.59 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Tubb5 ENSMUSG00000001525 223.53 2322.50 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Rpl4 ENSMUSG00000032399 221.80 2304.52 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Ubb ENSMUSG00000019505 209.67 2178.49 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Chchd2 ENSMUSG00000070493 202.73 2106.38 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
32. Rps26 ENSMUSG00000025362 195.80 2034.38 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
33. Set ENSMUSG00000054766 195.80 2034.38 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
34. Eif4g2 ENSMUSG00000005610 190.61 1980.46 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Hnrnpc ENSMUSG00000060373 190.61 1980.46 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
36. Hsp90ab1 ENSMUSG00000023944 190.61 1980.46 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Rpl18a ENSMUSG00000045128 188.87 1962.38 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
38. Tpt1 ENSMUSG00000060126 188.87 1962.38 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Grb10 ENSMUSG00000020176 185.41 1926.43 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
40. Eif5a ENSMUSG00000078812 176.74 1836.35 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Nedd4 ENSMUSG00000032216 176.74 1836.35 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
42. Rps20 ENSMUSG00000028234 176.74 1836.35 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
43. Rrm2 ENSMUSG00000020649 173.28 1800.40 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
44. Ybx1 ENSMUSG00000028639 168.08 1746.37 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
45. Rpl23 ENSMUSG00000071415 162.88 1692.34 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Pbx1 ENSMUSG00000052534 157.68 1638.31 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
47. Ago2 ENSMUSG00000036698 154.22 1602.36 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
48. Rplp1 ENSMUSG00000007892 154.22 1602.36 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
49. U2af2 ENSMUSG00000030435 154.22 1602.36 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
50. Atp5g3 ENSMUSG00000018770 152.48 1584.28 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
51. Banf1 ENSMUSG00000024844 150.75 1566.31 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
52. Hba-x ENSMUSG00000055609 147.29 1530.36 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
53. Trim28 ENSMUSG00000005566 145.55 1512.28 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
54. Eef1b2 ENSMUSG00000025967 143.82 1494.30 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 142.09 1476.33 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
56. Cox8a ENSMUSG00000035885 140.35 1458.25 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
57. Pabpc1 ENSMUSG00000022283 140.35 1458.25 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
58. Ndufa12 ENSMUSG00000020022 138.62 1440.28 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
59. Gm5805 ENSMUSG00000061848 136.89 1422.30 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
60. Sfrp1 ENSMUSG00000031548 133.42 1386.25 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
61. Col3a1 ENSMUSG00000026043 131.69 1368.27 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
62. Col1a1 ENSMUSG00000001506 128.23 1332.32 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
63. Ccnd2 ENSMUSG00000000184 124.76 1296.27 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
64. Rps5 ENSMUSG00000012848 124.76 1296.27 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
65. Ywhab ENSMUSG00000018326 124.76 1296.27 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
66. Rpl32 ENSMUSG00000057841 123.03 1278.29 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
67. Rpl37 ENSMUSG00000041841 123.03 1278.29 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
68. Ngfrap1 121.29 1260.21 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
69. Ran ENSMUSG00000029430 121.29 1260.21 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
70. Rpl39-ps ENSMUSG00000036305 121.29 1260.21 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
71. Rps3a1 ENSMUSG00000028081 121.29 1260.21 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
72. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 117.83 1224.27 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
73. Cdk4 ENSMUSG00000006728 116.10 1206.29 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
74. Son ENSMUSG00000022961 116.10 1206.29 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
75. Rpl8 ENSMUSG00000003970 112.63 1170.24 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
76. Rps4x ENSMUSG00000031320 109.16 1134.18 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
77. Fkbp1a ENSMUSG00000032966 107.43 1116.21 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
78. Gm14303 ENSMUSG00000081344 107.43 1116.21 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
79. Tecr ENSMUSG00000031708 107.43 1116.21 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
80. Hsp90aa1 ENSMUSG00000021270 105.70 1098.23 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
81. Hbb-bh1 ENSMUSG00000052217 103.97 1080.26 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
82. Paics ENSMUSG00000029247 103.97 1080.26 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
83. Peg3 ENSMUSG00000002265 102.23 1062.18 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
84. Crabp1 ENSMUSG00000032291 100.50 1044.20 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
85. Hba-a1 ENSMUSG00000069919 100.50 1044.20 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
86. Srsf3 ENSMUSG00000071172 95.30 990.18 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
87. Ldha ENSMUSG00000063229 93.57 972.20 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
88. Hmgn1 ENSMUSG00000040681 91.84 954.23 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
89. Pcbp1 ENSMUSG00000051695 91.84 954.23 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
90. 2810417H13Rik 90.10 936.15 RIKEN cDNA 2810417H13 gene
91. Anp32b ENSMUSG00000028333 88.37 918.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
92. Tmpo ENSMUSG00000019961 88.37 918.17 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
93. Gm14586 ENSMUSG00000083621 86.64 900.20 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
94. Gm2000 ENSMUSG00000078193 86.64 900.20 predicted gene 2000 [Source:MGI Symbol;Acc:MGI:3780170]
95. Gm8292 ENSMUSG00000100215 86.64 900.20 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
96. Gm10073 ENSMUSG00000060019 84.91 882.22 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
97. Rpl26 ENSMUSG00000060938 84.91 882.22 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
98. Scd2 ENSMUSG00000025203 84.91 882.22 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
99. Top2a ENSMUSG00000020914 83.17 864.14 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
100. Hnrnpa2b1 ENSMUSG00000004980 81.44 846.17 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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