Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s57.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4532.71 47090.01 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 4050.40 42079.33 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Co2 ENSMUSG00000064354 2838.97 29493.86 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Atp6 ENSMUSG00000064357 2629.97 27322.58 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd1 ENSMUSG00000064341 2359.50 24512.68 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1993.52 20710.54 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. Actb ENSMUSG00000029580 1068.63 11101.92 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
8. mt-Nd2 ENSMUSG00000064345 1018.51 10581.23 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1008.11 10473.19 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd3 ENSMUSG00000064360 875.71 9097.69 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. H19 ENSMUSG00000000031 870.04 9038.79 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. Mdk ENSMUSG00000027239 812.35 8439.45 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Rnr2 ENSMUSG00000064339 592.00 6150.25 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. Hbb-y ENSMUSG00000052187 568.36 5904.65 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
15. Igf2 ENSMUSG00000048583 535.26 5560.78 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Eef1a1 ENSMUSG00000037742 521.08 5413.46 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Co3 ENSMUSG00000064358 464.34 4824.00 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Pkm ENSMUSG00000032294 395.30 4106.74 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
19. Rpsa ENSMUSG00000032518 388.68 4037.97 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Gm13340 ENSMUSG00000083563 348.01 3615.45 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Cfl1 ENSMUSG00000056201 338.56 3517.28 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Hmga2 ENSMUSG00000056758 331.94 3448.50 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. mt-Nd5 ENSMUSG00000064367 327.21 3399.36 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
24. Tuba1b ENSMUSG00000023004 313.97 3261.81 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Npm1 ENSMUSG00000057113 290.33 3016.22 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Gm10800 ENSMUSG00000075014 285.60 2967.08 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
27. Rps26 ENSMUSG00000025362 239.26 2485.66 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
28. Tubb5 ENSMUSG00000001525 239.26 2485.66 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Hba-x ENSMUSG00000055609 236.42 2456.15 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
30. Rpl18a ENSMUSG00000045128 226.97 2357.98 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
31. Nedd4 ENSMUSG00000032216 207.11 2151.65 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Rpl4 ENSMUSG00000032399 202.38 2102.51 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. mt-Rnr1 ENSMUSG00000064337 191.03 1984.60 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
34. Rplp1 ENSMUSG00000007892 190.08 1974.73 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
35. Ubb ENSMUSG00000019505 187.25 1945.33 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
36. Hsp90ab1 ENSMUSG00000023944 186.30 1935.46 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Hba-a1 ENSMUSG00000069919 182.52 1896.19 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
38. Chchd2 ENSMUSG00000070493 177.79 1847.05 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Tpt1 ENSMUSG00000060126 174.95 1817.54 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Eef1b2 ENSMUSG00000025967 173.06 1797.91 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
41. U2af2 ENSMUSG00000030435 170.22 1768.40 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
42. Rps20 ENSMUSG00000028234 166.44 1729.13 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
43. Atp5g3 ENSMUSG00000018770 163.60 1699.63 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Rps5 ENSMUSG00000012848 162.66 1689.86 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
45. Rpl23 ENSMUSG00000071415 161.71 1679.99 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Trim28 ENSMUSG00000005566 161.71 1679.99 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
47. Eif5a ENSMUSG00000078812 160.77 1670.23 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
48. Hsp90aa1 ENSMUSG00000021270 159.82 1660.36 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Grb10 ENSMUSG00000020176 155.09 1611.22 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
50. Hnrnpc ENSMUSG00000060373 154.15 1601.45 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
51. Hbb-bh1 ENSMUSG00000052217 153.20 1591.58 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
52. Gm5805 ENSMUSG00000061848 152.26 1581.82 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
53. Eif4g2 ENSMUSG00000005610 151.31 1571.95 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
54. Fkbp1a ENSMUSG00000032966 149.42 1552.31 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
55. Banf1 ENSMUSG00000024844 148.47 1542.44 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
56. Paics ENSMUSG00000029247 148.47 1542.44 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
57. Ran ENSMUSG00000029430 147.53 1532.68 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
58. Rpl37 ENSMUSG00000041841 147.53 1532.68 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
59. Rrm2 ENSMUSG00000020649 133.34 1385.26 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
60. Cox8a ENSMUSG00000035885 129.56 1345.99 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
61. Sfrp1 ENSMUSG00000031548 127.67 1326.35 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
62. Ywhab ENSMUSG00000018326 127.67 1326.35 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
63. Ndufa12 ENSMUSG00000020022 125.78 1306.72 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
64. Col3a1 ENSMUSG00000026043 123.89 1287.08 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
65. Hba-a2 ENSMUSG00000069917 121.99 1267.35 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
66. Rps4x ENSMUSG00000031320 121.05 1257.58 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
67. Ldha ENSMUSG00000063229 119.16 1237.95 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
68. Tecr ENSMUSG00000031708 119.16 1237.95 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
69. Rpl32 ENSMUSG00000057841 115.37 1198.57 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
70. Set ENSMUSG00000054766 113.48 1178.94 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
71. Gm14303 ENSMUSG00000081344 112.54 1169.17 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
72. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 111.59 1159.30 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
73. Ywhae ENSMUSG00000020849 111.59 1159.30 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
74. Pabpc1 ENSMUSG00000022283 110.65 1149.54 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Rpl39-ps ENSMUSG00000036305 105.92 1100.40 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
76. Myl6 ENSMUSG00000090841 104.97 1090.53 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
77. Ngfrap1 104.03 1080.76 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
78. Cdk4 ENSMUSG00000006728 102.13 1061.02 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
79. Anp32b ENSMUSG00000028333 100.24 1041.39 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
80. Ddx39b ENSMUSG00000019432 100.24 1041.39 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
81. Rpl8 ENSMUSG00000003970 99.30 1031.62 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
82. Ybx1 ENSMUSG00000028639 98.35 1021.75 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
83. Pcbp1 ENSMUSG00000051695 97.41 1011.99 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
84. Gm14586 ENSMUSG00000083621 95.51 992.25 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
85. Gm9844 ENSMUSG00000091955 95.51 992.25 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
86. Hmgn1 ENSMUSG00000040681 95.51 992.25 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
87. Lamp1 ENSMUSG00000031447 93.62 972.61 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
88. Tmpo ENSMUSG00000019961 92.68 962.85 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
89. Tmsb10 ENSMUSG00000079523 92.68 962.85 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
90. Igfbp4 ENSMUSG00000017493 90.79 943.21 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
91. Scd2 ENSMUSG00000025203 90.79 943.21 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
92. Srsf3 ENSMUSG00000071172 88.90 923.58 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
93. Tpm4 ENSMUSG00000031799 88.90 923.58 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
94. Rps3a1 ENSMUSG00000028081 87.95 913.71 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
95. Son ENSMUSG00000022961 87.95 913.71 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
96. Eef2 ENSMUSG00000034994 87.00 903.84 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
97. Ddx5 ENSMUSG00000020719 86.06 894.07 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
98. Pbx1 ENSMUSG00000052534 86.06 894.07 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
99. Rpl26 ENSMUSG00000060938 86.06 894.07 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
100. Stmn1 ENSMUSG00000028832 86.06 894.07 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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