Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s56.

Sample reads: 96,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4157.91 43203.78 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2937.59 30523.75 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2741.10 28482.07 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2303.19 23931.86 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2293.50 23831.17 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2049.44 21295.21 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Rnr2 ENSMUSG00000064339 1342.80 13952.69 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1107.54 11508.17 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1085.51 11279.26 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd3 ENSMUSG00000064360 971.85 10098.25 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Actb ENSMUSG00000029580 922.51 9585.57 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Mdk ENSMUSG00000027239 696.95 7241.83 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. H19 ENSMUSG00000000031 633.51 6582.64 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Hbb-y ENSMUSG00000052187 546.28 5676.26 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
15. Hmga2 ENSMUSG00000056758 531.30 5520.60 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
16. Eef1a1 ENSMUSG00000037742 507.51 5273.41 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Igf2 ENSMUSG00000048583 498.70 5181.86 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Gm10800 ENSMUSG00000075014 447.60 4650.90 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
19. mt-Nd5 ENSMUSG00000064367 441.43 4586.79 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Cfl1 ENSMUSG00000056201 414.12 4303.02 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. mt-Co3 ENSMUSG00000064358 408.83 4248.05 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
22. Rpsa ENSMUSG00000032518 357.73 3717.08 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
23. Pkm ENSMUSG00000032294 342.75 3561.43 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Gm13340 ENSMUSG00000083563 333.06 3460.74 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
25. Tubb5 ENSMUSG00000001525 313.67 3259.26 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Tuba1b ENSMUSG00000023004 288.12 2993.78 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Npm1 ENSMUSG00000057113 276.67 2874.81 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Rps26 ENSMUSG00000025362 234.37 2435.28 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
29. Tpt1 ENSMUSG00000060126 224.68 2334.59 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Hba-a1 ENSMUSG00000069919 215.87 2243.05 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
31. Ubb ENSMUSG00000019505 211.46 2197.23 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Nedd4 ENSMUSG00000032216 197.37 2050.82 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. Chchd2 ENSMUSG00000070493 193.84 2014.14 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. U2af2 ENSMUSG00000030435 192.96 2005.00 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
35. Hbb-bh1 ENSMUSG00000052217 192.08 1995.85 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
36. Hnrnpc ENSMUSG00000060373 192.08 1995.85 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
37. Hsp90ab1 ENSMUSG00000023944 190.32 1977.57 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Rpl4 ENSMUSG00000032399 173.58 1803.63 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
39. Banf1 ENSMUSG00000024844 169.17 1757.80 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
40. Hba-x ENSMUSG00000055609 166.53 1730.37 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
41. Set ENSMUSG00000054766 164.77 1712.08 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
42. Eif5a ENSMUSG00000078812 163.88 1702.84 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
43. Trim28 ENSMUSG00000005566 155.07 1611.29 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
44. Rrm2 ENSMUSG00000020649 153.31 1593.01 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
45. Eif4g2 ENSMUSG00000005610 151.55 1574.72 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
46. Rplp1 ENSMUSG00000007892 149.79 1556.43 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
47. Atp5g3 ENSMUSG00000018770 148.91 1547.29 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Ybx1 ENSMUSG00000028639 148.02 1538.04 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
49. Ywhab ENSMUSG00000018326 146.26 1519.75 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Grb10 ENSMUSG00000020176 145.38 1510.61 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
51. mt-Rnr1 ENSMUSG00000064337 144.50 1501.46 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
52. Pcbp1 ENSMUSG00000051695 142.74 1483.17 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
53. Eef1b2 ENSMUSG00000025967 136.57 1419.06 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
54. Ran ENSMUSG00000029430 135.69 1409.92 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
55. Rpl18a ENSMUSG00000045128 130.40 1354.95 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
56. Rps20 ENSMUSG00000028234 129.52 1345.81 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
57. Rps5 ENSMUSG00000012848 128.64 1336.67 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
58. Sfrp1 ENSMUSG00000031548 128.64 1336.67 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
59. Fkbp1a ENSMUSG00000032966 126.00 1309.23 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
60. Myl6 ENSMUSG00000090841 126.00 1309.23 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
61. Rpl23 ENSMUSG00000071415 126.00 1309.23 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
62. Pabpc1 ENSMUSG00000022283 124.24 1290.95 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
63. Cox8a ENSMUSG00000035885 123.35 1281.70 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
64. Hsp90aa1 ENSMUSG00000021270 122.47 1272.55 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
65. Tecr ENSMUSG00000031708 119.83 1245.12 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
66. Ddx39b ENSMUSG00000019432 116.31 1208.55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
67. Paics ENSMUSG00000029247 116.31 1208.55 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
68. Hba-a2 ENSMUSG00000069917 113.66 1181.01 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
69. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 110.14 1144.44 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
70. Gm5805 ENSMUSG00000061848 107.49 1116.90 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
71. Rpl37 ENSMUSG00000041841 107.49 1116.90 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
72. Hmgn1 ENSMUSG00000040681 104.85 1089.47 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
73. Pbx1 ENSMUSG00000052534 103.97 1080.33 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
74. Ago2 ENSMUSG00000036698 103.09 1071.18 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
75. Rps4x ENSMUSG00000031320 101.33 1052.89 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
76. Col3a1 ENSMUSG00000026043 100.45 1043.75 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
77. Ldha ENSMUSG00000063229 100.45 1043.75 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
78. Malat1 ENSMUSG00000092341 98.68 1025.36 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
79. Gm14586 ENSMUSG00000083621 96.04 997.93 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
80. Ccnd2 ENSMUSG00000000184 95.16 988.78 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
81. Ndufa12 ENSMUSG00000020022 95.16 988.78 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
82. Ywhae ENSMUSG00000020849 94.28 979.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
83. Anp32b ENSMUSG00000028333 92.52 961.35 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
84. Gm17132 ENSMUSG00000061331 92.52 961.35 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
85. Cdk4 ENSMUSG00000006728 90.75 942.96 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
86. Ngfrap1 89.87 933.82 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
87. Rpl32 ENSMUSG00000057841 89.87 933.82 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
88. Rps3a1 ENSMUSG00000028081 89.87 933.82 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
89. Rpl26 ENSMUSG00000060938 88.11 915.53 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
90. Rpl39-ps ENSMUSG00000036305 88.11 915.53 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
91. Sub1 ENSMUSG00000022205 86.35 897.24 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
92. Fscn1 ENSMUSG00000029581 85.47 888.10 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
93. 2810417H13Rik 82.82 860.56 RIKEN cDNA 2810417H13 gene
94. Crabp1 ENSMUSG00000032291 81.94 851.42 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
95. Sf3b4 ENSMUSG00000068856 81.94 851.42 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
96. Col1a1 ENSMUSG00000001506 81.06 842.27 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
97. Peg3 ENSMUSG00000002265 81.06 842.27 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
98. Cdk1 ENSMUSG00000019942 80.18 833.13 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
99. Gm5963 ENSMUSG00000052192 80.18 833.13 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
100. Tmpo ENSMUSG00000019961 79.30 823.99 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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