Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s55.

Sample reads: 96,258. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4297.10 44641.65 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3697.38 38411.28 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 2681.72 27859.81 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 2590.21 26909.13 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2164.43 22485.80 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2050.24 21299.50 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Rnr2 ENSMUSG00000064339 1286.41 13364.24 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Nd2 ENSMUSG00000064345 1272.80 13222.85 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1005.08 10441.56 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Mdk ENSMUSG00000027239 902.98 9380.86 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. mt-Nd5 ENSMUSG00000064367 857.61 8909.53 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Actb ENSMUSG00000029580 847.02 8799.51 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 826.60 8587.37 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. H19 ENSMUSG00000000031 738.12 7668.17 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Hmga2 ENSMUSG00000056758 699.55 7267.47 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
16. Igf2 ENSMUSG00000048583 465.10 4831.82 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm10800 ENSMUSG00000075014 418.97 4352.59 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
18. Eef1a1 ENSMUSG00000037742 408.38 4242.57 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Pkm ENSMUSG00000032294 404.60 4203.30 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. mt-Co3 ENSMUSG00000064358 365.28 3794.82 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
21. Rpsa ENSMUSG00000032518 359.23 3731.96 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Gm13340 ENSMUSG00000083563 341.83 3551.20 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
23. Cfl1 ENSMUSG00000056201 323.68 3362.64 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Hbb-y ENSMUSG00000052187 300.24 3119.13 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
25. Npm1 ENSMUSG00000057113 263.18 2734.12 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. mt-Rnr1 ENSMUSG00000064337 260.91 2710.54 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
27. Tuba1b ENSMUSG00000023004 257.13 2671.27 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Tubb5 ENSMUSG00000001525 251.08 2608.42 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Hsp90ab1 ENSMUSG00000023944 214.78 2231.30 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
30. Set ENSMUSG00000054766 192.09 1995.58 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
31. Ubb ENSMUSG00000019505 191.34 1987.79 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Tpt1 ENSMUSG00000060126 187.55 1948.42 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Chchd2 ENSMUSG00000070493 178.48 1854.19 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Rpl4 ENSMUSG00000032399 176.21 1830.61 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Nedd4 ENSMUSG00000032216 167.89 1744.17 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
36. Rps26 ENSMUSG00000025362 167.13 1736.28 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
37. Rpl18a ENSMUSG00000045128 166.38 1728.49 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
38. Rps20 ENSMUSG00000028234 163.35 1697.01 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
39. Grb10 ENSMUSG00000020176 159.57 1657.74 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
40. Banf1 ENSMUSG00000024844 157.30 1634.16 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
41. Ywhab ENSMUSG00000018326 155.03 1610.57 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
42. Ago2 ENSMUSG00000036698 149.74 1555.62 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
43. Rplp1 ENSMUSG00000007892 148.98 1547.72 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
44. Rpl23 ENSMUSG00000071415 147.47 1532.03 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
45. Atp5g3 ENSMUSG00000018770 145.20 1508.45 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
46. Eif4g2 ENSMUSG00000005610 142.93 1484.87 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
47. Eif5a ENSMUSG00000078812 142.18 1477.08 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
48. U2af2 ENSMUSG00000030435 140.67 1461.39 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
49. Hnrnpc ENSMUSG00000060373 135.37 1406.33 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Pbx1 ENSMUSG00000052534 133.86 1390.64 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
51. Myl6 ENSMUSG00000090841 130.08 1351.37 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
52. Ran ENSMUSG00000029430 130.08 1351.37 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Fkbp1a ENSMUSG00000032966 127.81 1327.79 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Sfrp1 ENSMUSG00000031548 126.30 1312.10 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
55. Trim28 ENSMUSG00000005566 126.30 1312.10 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
56. Ybx1 ENSMUSG00000028639 126.30 1312.10 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
57. Eef1b2 ENSMUSG00000025967 124.78 1296.31 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
58. Ccnd2 ENSMUSG00000000184 123.27 1280.63 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
59. Gm14586 ENSMUSG00000083621 123.27 1280.63 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
60. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 121.00 1257.04 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
61. Peg3 ENSMUSG00000002265 120.25 1249.25 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
62. Rps5 ENSMUSG00000012848 120.25 1249.25 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
63. Tecr ENSMUSG00000031708 117.22 1217.77 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
64. Cox8a ENSMUSG00000035885 115.71 1202.09 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
65. Pabpc1 ENSMUSG00000022283 115.71 1202.09 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Col3a1 ENSMUSG00000026043 114.95 1194.19 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
67. Gm17132 ENSMUSG00000061331 114.95 1194.19 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
68. Rps4x ENSMUSG00000031320 112.68 1170.61 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Pcbp1 ENSMUSG00000051695 111.93 1162.82 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
70. Rpl37 ENSMUSG00000041841 111.17 1154.92 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
71. Ngfrap1 105.88 1099.96 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
72. Rpl39-ps ENSMUSG00000036305 105.88 1099.96 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
73. Hsp90aa1 ENSMUSG00000021270 103.61 1076.38 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
74. Wbp5 102.85 1068.49 WW domain binding protein 5
75. Rps3a1 ENSMUSG00000028081 101.34 1052.80 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
76. Ddx39b ENSMUSG00000019432 99.07 1029.22 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
77. Paics ENSMUSG00000029247 99.07 1029.22 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
78. 2810417H13Rik 96.80 1005.63 RIKEN cDNA 2810417H13 gene
79. Crabp1 ENSMUSG00000032291 96.80 1005.63 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
80. Gm14303 ENSMUSG00000081344 96.05 997.84 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
81. Ndufa12 ENSMUSG00000020022 95.29 989.95 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
82. Rpl32 ENSMUSG00000057841 95.29 989.95 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
83. Hmgn1 ENSMUSG00000040681 94.53 982.05 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
84. Ldha ENSMUSG00000063229 94.53 982.05 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
85. Marcksl1 ENSMUSG00000047945 94.53 982.05 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
86. Rpl26 ENSMUSG00000060938 94.53 982.05 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
87. Son ENSMUSG00000022961 92.26 958.47 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
88. Hba-x ENSMUSG00000055609 91.51 950.68 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
89. Eef2 ENSMUSG00000034994 90.00 934.99 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
90. Rpl8 ENSMUSG00000003970 90.00 934.99 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
91. Hbb-bh1 ENSMUSG00000052217 89.24 927.10 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
92. Srsf3 ENSMUSG00000071172 87.73 911.41 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
93. Ywhae ENSMUSG00000020849 86.97 903.51 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
94. Sub1 ENSMUSG00000022205 86.21 895.62 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
95. Lamp1 ENSMUSG00000031447 83.19 864.24 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
96. Rrm2 ENSMUSG00000020649 82.43 856.35 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
97. Gm26917 ENSMUSG00000097971 80.92 840.66 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
98. Hnrnpa0 ENSMUSG00000007836 80.92 840.66 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
99. Col1a1 ENSMUSG00000001506 80.16 832.76 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
100. Gm5805 ENSMUSG00000061848 80.16 832.76 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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