Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s54.

Sample reads: 96,228. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3781.46 39296.97 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3566.44 37062.48 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 2599.95 27018.71 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 2578.56 26796.42 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd4 ENSMUSG00000064363 2338.41 24300.78 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 2008.93 20876.82 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1110.90 11544.48 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 1092.18 11349.95 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Rnr2 ENSMUSG00000064339 945.10 9821.49 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. Mdk ENSMUSG00000027239 916.75 9526.88 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. H19 ENSMUSG00000000031 848.29 8815.44 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. Actb ENSMUSG00000029580 766.99 7970.57 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd5 ENSMUSG00000064367 699.60 7270.25 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
14. mt-Nd3 ENSMUSG00000064360 680.88 7075.71 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Hmga2 ENSMUSG00000056758 606.53 6303.07 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
16. Eef1a1 ENSMUSG00000037742 531.65 5524.91 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Igf2 ENSMUSG00000048583 524.70 5452.69 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Rpsa ENSMUSG00000032518 356.75 3707.35 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Gm13340 ENSMUSG00000083563 347.66 3612.89 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. mt-Co3 ENSMUSG00000064358 339.64 3529.54 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
21. Gm10800 ENSMUSG00000075014 311.29 3234.93 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
22. Pkm ENSMUSG00000032294 290.43 3018.15 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. Cfl1 ENSMUSG00000056201 287.22 2984.79 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. mt-Rnr1 ENSMUSG00000064337 275.99 2868.09 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
25. Npm1 ENSMUSG00000057113 241.22 2506.76 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Tuba1b ENSMUSG00000023004 238.55 2479.01 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Set ENSMUSG00000054766 225.18 2340.07 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
28. Hsp90ab1 ENSMUSG00000023944 217.15 2256.63 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Tubb5 ENSMUSG00000001525 212.87 2212.15 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Nedd4 ENSMUSG00000032216 212.34 2206.64 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Hbb-y ENSMUSG00000052187 202.71 2106.56 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
32. Ubb ENSMUSG00000019505 189.88 1973.23 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Tpt1 ENSMUSG00000060126 184.53 1917.64 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Rpl4 ENSMUSG00000032399 173.29 1800.83 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Hnrnpc ENSMUSG00000060373 171.16 1778.70 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
36. Atp5g3 ENSMUSG00000018770 167.41 1739.73 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
37. Eif4g2 ENSMUSG00000005610 167.41 1739.73 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Eif5a ENSMUSG00000078812 163.67 1700.86 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
39. Col1a1 ENSMUSG00000001506 163.13 1695.25 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
40. Rrm2 ENSMUSG00000020649 158.85 1650.77 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
41. Trim28 ENSMUSG00000005566 158.32 1645.26 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
42. Grb10 ENSMUSG00000020176 155.11 1611.90 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
43. Chchd2 ENSMUSG00000070493 154.04 1600.79 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Rps26 ENSMUSG00000025362 153.50 1595.17 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
45. Ywhab ENSMUSG00000018326 153.50 1595.17 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
46. U2af2 ENSMUSG00000030435 150.30 1561.92 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
47. Banf1 ENSMUSG00000024844 149.76 1556.31 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
48. Rpl18a ENSMUSG00000045128 148.16 1539.68 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
49. Sfrp1 ENSMUSG00000031548 140.67 1461.84 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
50. Ybx1 ENSMUSG00000028639 140.67 1461.84 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
51. Ago2 ENSMUSG00000036698 139.60 1450.72 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
52. Rps20 ENSMUSG00000028234 138.53 1439.61 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
53. Pbx1 ENSMUSG00000052534 136.92 1422.87 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
54. Eef1b2 ENSMUSG00000025967 136.39 1417.37 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Col3a1 ENSMUSG00000026043 134.78 1400.64 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
56. Rpl23 ENSMUSG00000071415 130.51 1356.26 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
57. Rplp1 ENSMUSG00000007892 129.44 1345.14 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
58. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 129.44 1345.14 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
59. Tecr ENSMUSG00000031708 123.55 1283.93 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
60. Myl6 ENSMUSG00000090841 123.02 1278.43 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
61. Pabpc1 ENSMUSG00000022283 120.88 1256.19 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Hsp90aa1 ENSMUSG00000021270 119.27 1239.46 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
63. Ran ENSMUSG00000029430 114.46 1189.47 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
64. Rps4x ENSMUSG00000031320 114.46 1189.47 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
65. Fkbp1a ENSMUSG00000032966 113.93 1183.96 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
66. Ddx39b ENSMUSG00000019432 109.65 1139.48 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
67. Rps3a1 ENSMUSG00000028081 109.65 1139.48 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
68. Paics ENSMUSG00000029247 108.04 1122.75 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
69. Peg3 ENSMUSG00000002265 104.30 1083.89 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
70. Anp32b ENSMUSG00000028333 103.76 1078.28 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
71. Ngfrap1 103.23 1072.77 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
72. Ccnd2 ENSMUSG00000000184 102.69 1067.16 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
73. Rps5 ENSMUSG00000012848 102.69 1067.16 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
74. Gm14303 ENSMUSG00000081344 99.48 1033.80 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
75. Pcbp1 ENSMUSG00000051695 98.95 1028.29 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
76. Ldha ENSMUSG00000063229 98.41 1022.68 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
77. Hmgn1 ENSMUSG00000040681 97.34 1011.56 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
78. Wbp5 96.27 1000.44 WW domain binding protein 5
79. Rpl8 ENSMUSG00000003970 95.74 994.93 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
80. Gm14586 ENSMUSG00000083621 93.60 972.69 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
81. Kpnb1 ENSMUSG00000001440 89.32 928.21 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
82. Gm15459 ENSMUSG00000100801 88.79 922.71 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
83. Gm5805 ENSMUSG00000061848 87.18 905.98 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
84. Son ENSMUSG00000022961 86.11 894.86 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
85. Tsc22d1 ENSMUSG00000022010 86.11 894.86 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
86. Marcksl1 ENSMUSG00000047945 85.58 889.35 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
87. Meg3 ENSMUSG00000021268 85.04 883.74 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
88. Rpl37 ENSMUSG00000041841 84.51 878.23 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
89. Cox8a ENSMUSG00000035885 83.97 872.62 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
90. Sub1 ENSMUSG00000022205 83.44 867.11 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
91. Stmn1 ENSMUSG00000028832 82.37 855.99 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
92. Hnrnpa0 ENSMUSG00000007836 81.83 850.38 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
93. Hnrnpa2b1 ENSMUSG00000004980 81.30 844.87 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
94. Cdk4 ENSMUSG00000006728 80.23 833.75 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
95. Fkbp4 ENSMUSG00000030357 79.69 828.14 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
96. Rpl39-ps ENSMUSG00000036305 79.69 828.14 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
97. Serbp1 ENSMUSG00000036371 79.69 828.14 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
98. Rpl32 ENSMUSG00000057841 78.62 817.02 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
99. Gm9844 ENSMUSG00000091955 77.55 805.90 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
100. Sf3b4 ENSMUSG00000068856 77.55 805.90 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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