Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s53.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3865.69 40167.17 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3225.69 33517.13 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2707.59 28133.72 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2021.87 21008.62 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1831.79 19033.56 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1738.76 18066.91 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. H19 ENSMUSG00000000031 1301.66 13525.14 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1156.50 12016.83 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Mdk ENSMUSG00000027239 1154.90 12000.20 midkine [Source:MGI Symbol;Acc:MGI:96949]
10. mt-Nd2 ENSMUSG00000064345 947.98 9850.16 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Actb ENSMUSG00000029580 935.95 9725.16 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Nd3 ENSMUSG00000064360 794.79 8258.41 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Igf2 ENSMUSG00000048583 748.28 7775.14 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Gm10800 ENSMUSG00000075014 597.50 6208.44 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
15. mt-Rnr2 ENSMUSG00000064339 588.68 6116.79 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. mt-Nd5 ENSMUSG00000064367 536.55 5575.12 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
17. mt-Co3 ENSMUSG00000064358 463.56 4816.71 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Cfl1 ENSMUSG00000056201 454.74 4725.06 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
19. Gm13340 ENSMUSG00000083563 404.21 4200.02 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Eef1a1 ENSMUSG00000037742 365.72 3800.08 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Pkm ENSMUSG00000032294 339.25 3525.04 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
22. Hmga2 ENSMUSG00000056758 321.61 3341.75 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Rpsa ENSMUSG00000032518 316.79 3291.67 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
24. Hbb-y ENSMUSG00000052187 307.17 3191.71 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
25. Col1a1 ENSMUSG00000001506 291.93 3033.35 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
26. Npm1 ENSMUSG00000057113 251.03 2608.37 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Tubb5 ENSMUSG00000001525 242.21 2516.73 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Tuba1b ENSMUSG00000023004 239.00 2483.37 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Tpt1 ENSMUSG00000060126 234.19 2433.39 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Nedd4 ENSMUSG00000032216 216.54 2250.00 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Ubb ENSMUSG00000019505 214.94 2233.37 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Rpl4 ENSMUSG00000032399 212.53 2208.33 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Col3a1 ENSMUSG00000026043 208.52 2166.67 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
34. Rps26 ENSMUSG00000025362 200.50 2083.33 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
35. Rpl18a ENSMUSG00000045128 196.49 2041.67 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
36. Fkbp1a ENSMUSG00000032966 183.66 1908.35 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
37. Hnrnpc ENSMUSG00000060373 177.24 1841.65 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
38. Grb10 ENSMUSG00000020176 170.03 1766.73 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
39. Atp5g3 ENSMUSG00000018770 166.82 1733.37 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
40. Eif5a ENSMUSG00000078812 162.81 1691.71 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Rps20 ENSMUSG00000028234 157.19 1633.31 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
42. Hsp90ab1 ENSMUSG00000023944 153.99 1600.06 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
43. Ndufa12 ENSMUSG00000020022 151.58 1575.02 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
44. Banf1 ENSMUSG00000024844 147.57 1533.35 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
45. U2af2 ENSMUSG00000030435 147.57 1533.35 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
46. Chchd2 ENSMUSG00000070493 141.15 1466.65 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Tecr ENSMUSG00000031708 135.54 1408.35 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
48. Sfrp1 ENSMUSG00000031548 131.53 1366.69 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
49. Crabp1 ENSMUSG00000032291 130.73 1358.37 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
50. Eef1b2 ENSMUSG00000025967 130.73 1358.37 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Gm9844 ENSMUSG00000091955 126.72 1316.71 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
52. Rplp1 ENSMUSG00000007892 125.92 1308.40 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
53. Paics ENSMUSG00000029247 122.71 1275.04 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
54. Cdk4 ENSMUSG00000006728 121.91 1266.73 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
55. Rpl32 ENSMUSG00000057841 121.10 1258.31 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
56. Rpl39-ps ENSMUSG00000036305 120.30 1250.00 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
57. Ddx39b ENSMUSG00000019432 118.70 1233.37 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
58. Ywhae ENSMUSG00000020849 117.90 1225.06 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
59. Ngfrap1 117.09 1216.65 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
60. Hsp90aa1 ENSMUSG00000021270 116.29 1208.33 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
61. Hba-a1 ENSMUSG00000069919 115.49 1200.02 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
62. Trim28 ENSMUSG00000005566 115.49 1200.02 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
63. Rrm2 ENSMUSG00000020649 114.69 1191.71 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
64. Rpl23 ENSMUSG00000071415 112.28 1166.67 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
65. Eef2 ENSMUSG00000034994 111.48 1158.35 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
66. Jund ENSMUSG00000071076, ENSMUSG00000110974 110.68 1150.04 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
67. Myl6 ENSMUSG00000090841 109.88 1141.73 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
68. Rpl37 ENSMUSG00000041841 108.27 1125.00 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
69. Ran ENSMUSG00000029430 106.67 1108.37 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
70. Eif4g2 ENSMUSG00000005610 103.46 1075.02 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
71. Tmsb10 ENSMUSG00000079523 102.66 1066.71 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
72. mt-Rnr1 ENSMUSG00000064337 102.66 1066.71 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
73. Gm9846 Gm9846 101.86 1058.40
74. Pabpc1 ENSMUSG00000022283 101.86 1058.40 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Tmpo ENSMUSG00000019961 101.05 1049.98 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
76. Cox8a ENSMUSG00000035885 99.45 1033.35 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
77. Gm14303 ENSMUSG00000081344 99.45 1033.35 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
78. Hba-x ENSMUSG00000055609 99.45 1033.35 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
79. Hbb-bh1 ENSMUSG00000052217 98.65 1025.04 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
80. Rps4x ENSMUSG00000031320 97.04 1008.31 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
81. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 94.64 983.37 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
82. Top2a ENSMUSG00000020914 94.64 983.37 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
83. Hnrnpa0 ENSMUSG00000007836 93.84 975.06 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
84. Rps5 ENSMUSG00000012848 93.84 975.06 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
85. Igfbp4 ENSMUSG00000017493 93.03 966.65 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
86. Pcbp1 ENSMUSG00000051695 93.03 966.65 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
87. Kpnb1 ENSMUSG00000001440 92.23 958.33 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
88. Hmgn1 ENSMUSG00000040681 90.63 941.71 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
89. Fkbp4 ENSMUSG00000030357 89.83 933.40 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
90. Gm14586 ENSMUSG00000083621 89.83 933.40 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
91. Meg3 ENSMUSG00000021268 89.83 933.40 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
92. Ldha ENSMUSG00000063229 89.02 924.98 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
93. Ssbp3 ENSMUSG00000061887 88.22 916.67 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
94. Lbh ENSMUSG00000024063 87.42 908.35 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
95. Ybx1 ENSMUSG00000028639 85.82 891.73 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
96. Gm15459 ENSMUSG00000100801 85.01 883.31 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
97. Gm5805 ENSMUSG00000061848 85.01 883.31 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
98. Sepw1 85.01 883.31 selenoprotein W, muscle 1
99. Sf3b4 ENSMUSG00000068856 85.01 883.31 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
100. Gm5963 ENSMUSG00000052192 84.21 875.00 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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