Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s51.

Sample reads: 96,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3836.67 39860.29 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3681.00 38242.99 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd1 ENSMUSG00000064341 2546.21 26453.32 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 2337.99 24290.07 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2095.07 21766.30 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2069.79 21503.66 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1156.60 12016.26 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1011.84 10512.30 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd2 ENSMUSG00000064345 981.10 10192.94 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Actb ENSMUSG00000029580 948.88 9858.19 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd3 ENSMUSG00000064360 857.66 8910.48 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Mdk ENSMUSG00000027239 837.34 8699.37 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Rnr2 ENSMUSG00000064339 830.39 8627.17 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. Igf2 ENSMUSG00000048583 700.01 7272.61 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Hmga2 ENSMUSG00000056758 547.32 5686.27 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
16. Eef1a1 ENSMUSG00000037742 479.89 4985.72 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Co3 ENSMUSG00000064358 475.43 4939.38 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. mt-Nd5 ENSMUSG00000064367 411.97 4280.08 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Col1a1 ENSMUSG00000001506 360.91 3749.60 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
20. Pkm ENSMUSG00000032294 356.45 3703.26 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
21. Gm13340 ENSMUSG00000083563 351.00 3646.64 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Rpsa ENSMUSG00000032518 326.21 3389.09 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
23. Hbb-y ENSMUSG00000052187 318.28 3306.70 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
24. Tubb5 ENSMUSG00000001525 312.33 3244.89 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Cfl1 ENSMUSG00000056201 311.83 3239.69 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Tuba1b ENSMUSG00000023004 293.49 3049.15 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Npm1 ENSMUSG00000057113 237.96 2472.24 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Hba-x ENSMUSG00000055609 227.06 2358.99 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
29. Hsp90ab1 ENSMUSG00000023944 226.56 2353.80 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
30. Ubb ENSMUSG00000019505 203.76 2116.92 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Col3a1 ENSMUSG00000026043 202.27 2101.44 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
32. Rps26 ENSMUSG00000025362 187.40 1946.95 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
33. Tpt1 ENSMUSG00000060126 187.40 1946.95 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Eif5a ENSMUSG00000078812 181.45 1885.14 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Chchd2 ENSMUSG00000070493 172.03 1787.27 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
36. Nedd4 ENSMUSG00000032216 171.04 1776.98 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
37. Rpl4 ENSMUSG00000032399 170.04 1766.60 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Hnrnpc ENSMUSG00000060373 164.10 1704.88 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
39. Set ENSMUSG00000054766 158.64 1648.16 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
40. Ybx1 ENSMUSG00000028639 157.16 1632.78 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
41. U2af2 ENSMUSG00000030435 155.17 1612.11 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
42. Rpl18a ENSMUSG00000045128 151.70 1576.06 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
43. Rps20 ENSMUSG00000028234 146.74 1524.53 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
44. Myl6 ENSMUSG00000090841 146.25 1519.43 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
45. Rpl23 ENSMUSG00000071415 139.80 1452.42 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Atp5g3 ENSMUSG00000018770 139.31 1447.33 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Grb10 ENSMUSG00000020176 137.82 1431.85 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
48. Gm14303 ENSMUSG00000081344 135.84 1411.28 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
49. Ywhab ENSMUSG00000018326 135.84 1411.28 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Banf1 ENSMUSG00000024844 131.87 1370.04 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
51. Eef1b2 ENSMUSG00000025967 129.89 1349.47 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
52. Eif4g2 ENSMUSG00000005610 129.39 1344.27 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
53. Fkbp1a ENSMUSG00000032966 128.90 1339.18 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Trim28 ENSMUSG00000005566 128.40 1333.99 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
55. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 122.95 1277.36 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
56. Ago2 ENSMUSG00000036698 117.49 1220.64 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
57. Sfrp1 ENSMUSG00000031548 117.00 1215.55 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
58. Pabpc1 ENSMUSG00000022283 115.02 1194.98 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
59. Ngfrap1 114.02 1184.59 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
60. Rpl37 ENSMUSG00000041841 114.02 1184.59 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
61. Ddx39b ENSMUSG00000019432 113.53 1179.50 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
62. Cox8a ENSMUSG00000035885 113.03 1174.30 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
63. Col1a2 ENSMUSG00000029661 111.05 1153.73 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
64. Rplp1 ENSMUSG00000007892 111.05 1153.73 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
65. Gm5805 ENSMUSG00000061848 110.06 1143.45 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
66. Rps5 ENSMUSG00000012848 110.06 1143.45 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
67. mt-Rnr1 ENSMUSG00000064337 110.06 1143.45 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
68. Hba-a1 ENSMUSG00000069919 107.58 1117.68 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
69. Pbx1 ENSMUSG00000052534 107.58 1117.68 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
70. Rpl8 ENSMUSG00000003970 104.60 1086.72 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
71. Rps4x ENSMUSG00000031320 104.11 1081.63 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
72. Meg3 ENSMUSG00000021268 102.62 1066.15 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
73. Wbp5 102.62 1066.15 WW domain binding protein 5
74. Rps3a1 ENSMUSG00000028081 101.63 1055.86 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
75. Ccnd2 ENSMUSG00000000184 100.14 1040.38 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
76. Cdk4 ENSMUSG00000006728 98.66 1025.01 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
77. Marcksl1 ENSMUSG00000047945 96.18 999.24 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
78. Ndufa12 ENSMUSG00000020022 96.18 999.24 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
79. Ran ENSMUSG00000029430 95.19 988.96 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
80. Hmgn1 ENSMUSG00000040681 94.69 983.76 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
81. Lamp1 ENSMUSG00000031447 93.20 968.28 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
82. Son ENSMUSG00000022961 93.20 968.28 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
83. Gm14586 ENSMUSG00000083621 92.21 958.00 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
84. Malat1 ENSMUSG00000092341 91.72 952.91 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
85. Hsp90aa1 ENSMUSG00000021270 90.23 937.43 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
86. Tecr ENSMUSG00000031708 90.23 937.43 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
87. Fscn1 ENSMUSG00000029581 89.73 932.23 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
88. Rpl39-ps ENSMUSG00000036305 89.73 932.23 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
89. Rpl32 ENSMUSG00000057841 89.24 927.14 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
90. Paics ENSMUSG00000029247 87.75 911.66 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
91. Pcbp1 ENSMUSG00000051695 87.25 906.47 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
92. Sf3b4 ENSMUSG00000068856 87.25 906.47 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
93. Rpl26 ENSMUSG00000060938 86.76 901.38 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
94. Hnrnpa0 ENSMUSG00000007836 86.26 896.18 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
95. Peg3 ENSMUSG00000002265 84.77 880.70 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
96. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 84.28 875.61 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
97. Hbb-bh1 ENSMUSG00000052217 83.29 865.32 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
98. Anp32b ENSMUSG00000028333 81.30 844.65 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
99. Crabp1 ENSMUSG00000032291 81.30 844.65 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
100. Ldha ENSMUSG00000063229 81.30 844.65 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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