Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s50.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Nd4 ENSMUSG00000064363 5197.70 54007.78 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
2. mt-Cytb ENSMUSG00000064370 5100.11 52993.76 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 2244.51 23322.05 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 1963.37 20400.80 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. Mdk ENSMUSG00000027239 1547.46 16079.21 midkine [Source:MGI Symbol;Acc:MGI:96949]
6. Gm13340 ENSMUSG00000083563 1196.61 12433.63 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
7. mt-Nd2 ENSMUSG00000064345 1085.08 11274.75 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
8. mt-Co3 ENSMUSG00000064358 1054.88 10960.95 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
9. mt-Co2 ENSMUSG00000064354 950.32 9874.50 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
10. H19 ENSMUSG00000000031 917.79 9536.49 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. Pkm ENSMUSG00000032294 738.88 7677.49 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
12. mt-Rnr2 ENSMUSG00000064339 645.94 6711.77 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
13. mt-Co1 ENSMUSG00000064351 580.88 6035.75 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
14. Tuba1b ENSMUSG00000023004 467.03 4852.77 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
15. mt-Nd3 ENSMUSG00000064360 425.20 4418.13 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. Rpl4 ENSMUSG00000032399 390.35 4056.01 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
17. Hmga2 ENSMUSG00000056758 378.73 3935.27 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. mt-Nd5 ENSMUSG00000064367 348.53 3621.47 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Hbb-y ENSMUSG00000052187 343.88 3573.16 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Igf2 ENSMUSG00000048583 322.97 3355.89 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
21. Ptma ENSMUSG00000026238 320.64 3331.68 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
22. Rpl18a ENSMUSG00000045128 318.32 3307.57 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
23. Ddx39b ENSMUSG00000019432 295.09 3066.19 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
24. Ubb ENSMUSG00000019505 290.44 3017.88 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Tubb5 ENSMUSG00000001525 264.88 2752.29 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Cfl1 ENSMUSG00000056201 262.56 2728.18 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Rps26 ENSMUSG00000025362 262.56 2728.18 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
28. Npm1 ENSMUSG00000057113 248.62 2583.34 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
29. Gm14303 ENSMUSG00000081344 241.65 2510.91 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
30. Hbb-bh1 ENSMUSG00000052217 234.67 2438.39 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
31. Tpt1 ENSMUSG00000060126 232.35 2414.28 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Eef1a1 ENSMUSG00000037742 220.73 2293.54 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
33. Gm10073 ENSMUSG00000060019 218.41 2269.43 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
34. Rps20 ENSMUSG00000028234 204.47 2124.59 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
35. Myl6 ENSMUSG00000090841 188.20 1955.53 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
36. Top2a ENSMUSG00000020914 188.20 1955.53 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
37. Gm15501 ENSMUSG00000087412 185.88 1931.42 predicted pseudogene 15501 [Source:MGI Symbol;Acc:MGI:3704296]
38. Gm8292 ENSMUSG00000100215 183.56 1907.32 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
39. Chchd2 ENSMUSG00000070493 171.94 1786.58 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Hsp90aa1 ENSMUSG00000021270 171.94 1786.58 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Rpl23 ENSMUSG00000071415 169.62 1762.47 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Rps4x ENSMUSG00000031320 169.62 1762.47 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
43. Ywhab ENSMUSG00000018326 169.62 1762.47 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
44. Paics ENSMUSG00000029247 164.97 1714.16 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
45. Gm15459 ENSMUSG00000100801 155.68 1617.63 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
46. Grb10 ENSMUSG00000020176 155.68 1617.63 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
47. Hspe1 ENSMUSG00000073676 155.68 1617.63 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
48. Rpl37 ENSMUSG00000041841 155.68 1617.63 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
49. Sfrp1 ENSMUSG00000031548 155.68 1617.63 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
50. Ran ENSMUSG00000029430 151.03 1569.31 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
51. Tead2 ENSMUSG00000030796 151.03 1569.31 TEA domain family member 2 [Source:MGI Symbol;Acc:MGI:104904]
52. Actb ENSMUSG00000029580 148.70 1545.10 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
53. Rpl8 ENSMUSG00000003970 146.38 1520.99 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
54. Tecr ENSMUSG00000031708 144.06 1496.89 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
55. Rps5 ENSMUSG00000012848 141.73 1472.68 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
56. Eif4g2 ENSMUSG00000005610 139.41 1448.57 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
57. Gm5963 ENSMUSG00000052192 139.41 1448.57 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
58. Hnrnpk ENSMUSG00000021546 137.09 1424.46 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
59. Rpl3-ps1 ENSMUSG00000084349 137.09 1424.46 ribosomal protein L3, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3644217]
60. Crabp1 ENSMUSG00000032291 134.76 1400.25 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
61. Ndufa12 ENSMUSG00000020022 134.76 1400.25 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
62. Banf1 ENSMUSG00000024844 130.12 1352.04 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
63. Hnrnpc ENSMUSG00000060373 130.12 1352.04 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
64. Hnrnpdl ENSMUSG00000029328 130.12 1352.04 heterogeneous nuclear ribonucleoprotein D-like [Source:MGI Symbol;Acc:MGI:1355299]
65. Rps12-ps9 ENSMUSG00000069862 130.12 1352.04 ribosomal protein S12, pseudogene 9 [Source:MGI Symbol;Acc:MGI:3704324]
66. Rps8 ENSMUSG00000047675 130.12 1352.04 ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
67. U2af2 ENSMUSG00000030435 130.12 1352.04 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
68. Adprh ENSMUSG00000002844 127.79 1327.83 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
69. Hnrnpa0 ENSMUSG00000007836 127.79 1327.83 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
70. Tmpo ENSMUSG00000019961 125.47 1303.72 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
71. Cdc42 ENSMUSG00000006699 123.15 1279.62 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
72. Eef1b2 ENSMUSG00000025967 123.15 1279.62 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
73. Eif4h ENSMUSG00000040731 123.15 1279.62 eukaryotic translation initiation factor 4H [Source:MGI Symbol;Acc:MGI:1341822]
74. Hsp90ab1 ENSMUSG00000023944 123.15 1279.62 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
75. Rpl32 ENSMUSG00000057841 123.15 1279.62 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
76. Rps9 ENSMUSG00000006333 123.15 1279.62 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
77. Mcm7 ENSMUSG00000029730 120.82 1255.41 minichromosome maintenance complex component 7 [Source:MGI Symbol;Acc:MGI:1298398]
78. Rpl26 ENSMUSG00000060938 120.82 1255.41 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
79. Meg3 ENSMUSG00000021268 118.50 1231.30 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
80. Rpl13 ENSMUSG00000000740 118.50 1231.30 ribosomal protein L13 [Source:MGI Symbol;Acc:MGI:105922]
81. Rpl34 ENSMUSG00000062006 118.50 1231.30 ribosomal protein L34 [Source:MGI Symbol;Acc:MGI:1915686]
82. Srsf3 ENSMUSG00000071172 118.50 1231.30 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
83. Atp5g3 ENSMUSG00000018770 116.18 1207.19 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
84. Cdc42ep4 ENSMUSG00000041598 116.18 1207.19 CDC42 effector protein (Rho GTPase binding) 4 [Source:MGI Symbol;Acc:MGI:1929760]
85. Peg3 ENSMUSG00000002265 116.18 1207.19 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
86. Ngfrap1 113.85 1182.98 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
87. Luc7l ENSMUSG00000024188 111.53 1158.88 Luc7-like [Source:MGI Symbol;Acc:MGI:1914228]
88. Rpl28-ps1 ENSMUSG00000058603 111.53 1158.88 ribosomal protein L28, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3705349]
89. Gm14586 ENSMUSG00000083621 109.21 1134.77 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
90. Kpnb1 ENSMUSG00000001440 109.21 1134.77 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
91. Rpl14-ps1 ENSMUSG00000046721 106.88 1110.56 ribosomal protein L14, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3710579]
92. Rpl41 ENSMUSG00000093674 104.56 1086.45 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
93. Gm9844 ENSMUSG00000091955 102.23 1062.24 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
94. Gm9846 Gm9846 102.23 1062.24
95. Tpm3 ENSMUSG00000027940 102.23 1062.24 tropomyosin 3, gamma [Source:MGI Symbol;Acc:MGI:1890149]
96. Rpl31-ps8 ENSMUSG00000067870 99.91 1038.14 ribosomal protein L31, pseudogene 8 [Source:MGI Symbol;Acc:MGI:3647726]
97. Ldha ENSMUSG00000063229 97.59 1014.03 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
98. Fscn1 ENSMUSG00000029581 95.26 989.82 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
99. mt-Rnr1 ENSMUSG00000064337 95.26 989.82 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
100. Sparc ENSMUSG00000018593 92.94 965.71 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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