Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s5.

Sample reads: 96,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3262.40 33893.21 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3101.29 32219.43 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2036.05 21152.61 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1977.71 20546.51 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1897.16 19709.68 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1586.06 16477.64 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Rnr2 ENSMUSG00000064339 1123.58 11672.92 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1049.97 10908.18 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 848.58 8815.93 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Hbb-y ENSMUSG00000052187 718.03 7459.64 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. mt-Nd3 ENSMUSG00000064360 630.54 6550.71 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Eef1a1 ENSMUSG00000037742 586.09 6088.91 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Actb ENSMUSG00000029580 540.26 5612.78 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Rpsa ENSMUSG00000032518 522.21 5425.26 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. mt-Nd5 ENSMUSG00000064367 490.26 5093.33 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
16. Pkm ENSMUSG00000032294 409.71 4256.49 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
17. mt-Co3 ENSMUSG00000064358 379.15 3939.01 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Cfl1 ENSMUSG00000056201 373.60 3881.35 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
19. Gm13340 ENSMUSG00000083563 368.04 3823.58 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Mdk ENSMUSG00000027239 363.88 3780.36 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Set ENSMUSG00000054766 356.93 3708.16 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
22. Npm1 ENSMUSG00000057113 329.16 3419.66 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Tuba1b ENSMUSG00000023004 327.77 3405.22 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Rpl18a ENSMUSG00000045128 302.77 3145.49 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
25. Hnrnpc ENSMUSG00000060373 280.55 2914.65 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
26. Rps26 ENSMUSG00000025362 277.77 2885.76 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
27. Gm10800 ENSMUSG00000075014 269.44 2799.22 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
28. Rpl4 ENSMUSG00000032399 254.16 2640.48 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
29. Rplp1 ENSMUSG00000007892 252.77 2626.04 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
30. Hbb-bh1 ENSMUSG00000052217 248.60 2582.72 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
31. Hba-a1 ENSMUSG00000069919 218.05 2265.33 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
32. Hsp90aa1 ENSMUSG00000021270 208.33 2164.35 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
33. Rrm2 ENSMUSG00000020649 208.33 2164.35 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
34. Rps20 ENSMUSG00000028234 205.55 2135.47 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
35. H19 ENSMUSG00000000031 204.16 2121.03 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
36. Nedd4 ENSMUSG00000032216 204.16 2121.03 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
37. U2af2 ENSMUSG00000030435 197.22 2048.93 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
38. Eif5a ENSMUSG00000078812 194.44 2020.05 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
39. Ubb ENSMUSG00000019505 191.66 1991.16 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
40. Hba-x ENSMUSG00000055609 188.88 1962.28 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
41. Hsp90ab1 ENSMUSG00000023944 187.49 1947.84 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
42. Tubb5 ENSMUSG00000001525 186.11 1933.50 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
43. Chchd2 ENSMUSG00000070493 183.33 1904.62 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Hmga2 ENSMUSG00000056758 177.77 1846.86 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
45. Rps4x ENSMUSG00000031320 177.77 1846.86 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
46. Eef1b2 ENSMUSG00000025967 176.38 1832.42 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Rpl37 ENSMUSG00000041841 176.38 1832.42 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
48. Rpl39-ps ENSMUSG00000036305 174.99 1817.98 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
49. Atp5g3 ENSMUSG00000018770 173.61 1803.64 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
50. Eif4g2 ENSMUSG00000005610 173.61 1803.64 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
51. Tubb2b ENSMUSG00000045136 173.61 1803.64 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
52. Ybx1 ENSMUSG00000028639 170.83 1774.76 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
53. mt-Rnr1 ENSMUSG00000064337 169.44 1760.32 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
54. Ldha ENSMUSG00000063229 168.05 1745.88 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
55. Tpt1 ENSMUSG00000060126 163.88 1702.56 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
56. Crabp1 ENSMUSG00000032291 161.11 1673.78 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
57. Cox8a ENSMUSG00000035885 159.72 1659.34 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
58. Paics ENSMUSG00000029247 159.72 1659.34 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
59. Rpl23 ENSMUSG00000071415 158.33 1644.90 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
60. Banf1 ENSMUSG00000024844 151.38 1572.69 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
61. Ran ENSMUSG00000029430 151.38 1572.69 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
62. Tmsb4x ENSMUSG00000049775 150.00 1558.36 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
63. Rps5 ENSMUSG00000012848 148.61 1543.92 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
64. Ccnd2 ENSMUSG00000000184 144.44 1500.59 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
65. Gm14303 ENSMUSG00000081344 143.05 1486.15 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
66. Fkbp1a ENSMUSG00000032966 136.11 1414.05 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
67. Hba-a2 ENSMUSG00000069917 134.72 1399.61 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
68. Map1b ENSMUSG00000052727 134.72 1399.61 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
69. Pabpc1 ENSMUSG00000022283 134.72 1399.61 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
70. Rpl32 ENSMUSG00000057841 133.33 1385.17 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
71. Rps3a1 ENSMUSG00000028081 133.33 1385.17 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
72. Gm5805 ENSMUSG00000061848 131.94 1370.73 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
73. 2810417H13Rik 129.16 1341.85 RIKEN cDNA 2810417H13 gene
74. Malat1 ENSMUSG00000092341 126.38 1312.97 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
75. Serbp1 ENSMUSG00000036371 126.38 1312.97 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
76. Anp32b ENSMUSG00000028333 116.66 1211.99 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
77. Rpl8 ENSMUSG00000003970 113.89 1183.21 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
78. Ywhab ENSMUSG00000018326 113.89 1183.21 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
79. Son ENSMUSG00000022961 112.50 1168.77 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
80. Tecr ENSMUSG00000031708 112.50 1168.77 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
81. Grb10 ENSMUSG00000020176 109.72 1139.89 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
82. Ywhae ENSMUSG00000020849 108.33 1125.44 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
83. Fkbp4 ENSMUSG00000030357 106.94 1111.00 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
84. Gm9846 Gm9846 106.94 1111.00
85. Pcbp1 ENSMUSG00000051695 106.94 1111.00 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
86. Ndufa12 ENSMUSG00000020022 105.55 1096.56 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
87. Top2a ENSMUSG00000020914 104.16 1082.12 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
88. Gm14586 ENSMUSG00000083621 102.77 1067.68 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Ndufc2 ENSMUSG00000030647 102.77 1067.68 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
90. Igf2 ENSMUSG00000048583 101.39 1053.35 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
91. Gm5963 ENSMUSG00000052192 100.00 1038.90 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
92. Trim28 ENSMUSG00000005566 100.00 1038.90 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
93. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 94.44 981.14 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
94. Rpl13a ENSMUSG00000074129 94.44 981.14 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
95. Hmgn1 ENSMUSG00000040681 93.05 966.70 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
96. Morf4l2 ENSMUSG00000031422 93.05 966.70 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
97. Trp53i11 ENSMUSG00000068735 93.05 966.70 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
98. Gm10073 ENSMUSG00000060019 91.66 952.26 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
99. Myl6 ENSMUSG00000090841 91.66 952.26 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
100. Rps8 ENSMUSG00000047675 90.27 937.82 ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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