Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s49.

Sample reads: 96,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3946.86 41012.38 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2992.50 31095.49 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2948.48 30638.07 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2314.59 24051.23 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2287.30 23767.66 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2267.93 23566.38 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1157.73 12030.14 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Actb ENSMUSG00000029580 934.11 9706.47 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
9. mt-Nd3 ENSMUSG00000064360 914.74 9505.19 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. H19 ENSMUSG00000000031 878.65 9130.18 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. Mdk ENSMUSG00000027239 869.84 9038.63 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. mt-Nd2 ENSMUSG00000064345 861.04 8947.19 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. mt-Rnr2 ENSMUSG00000064339 758.91 7885.94 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. Igf2 ENSMUSG00000048583 684.96 7117.52 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Eef1a1 ENSMUSG00000037742 519.44 5397.57 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Hmga2 ENSMUSG00000056758 420.83 4372.90 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. mt-Co3 ENSMUSG00000064358 397.06 4125.91 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Rpsa ENSMUSG00000032518 379.46 3943.02 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Gm13340 ENSMUSG00000083563 353.92 3677.63 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Tubb5 ENSMUSG00000001525 342.48 3558.76 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
21. Cfl1 ENSMUSG00000056201 330.15 3430.64 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Pkm ENSMUSG00000032294 319.59 3320.90 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. mt-Nd5 ENSMUSG00000064367 319.59 3320.90 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
24. Tuba1b ENSMUSG00000023004 299.34 3110.48 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Col1a1 ENSMUSG00000001506 265.88 2762.80 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
26. Npm1 ENSMUSG00000057113 257.08 2671.35 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Hsp90ab1 ENSMUSG00000023944 238.59 2479.22 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
28. Gm10800 ENSMUSG00000075014 228.03 2369.49 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
29. Hnrnpc ENSMUSG00000060373 213.94 2223.08 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
30. Eif5a ENSMUSG00000078812 200.73 2085.81 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
31. Ubb ENSMUSG00000019505 200.73 2085.81 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Nedd4 ENSMUSG00000032216 198.97 2067.53 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. Tpt1 ENSMUSG00000060126 191.93 1994.37 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Chchd2 ENSMUSG00000070493 182.24 1893.68 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Col3a1 ENSMUSG00000026043 181.36 1884.54 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
36. Atp5g3 ENSMUSG00000018770 167.28 1738.23 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
37. Rps26 ENSMUSG00000025362 166.40 1729.09 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
38. Grb10 ENSMUSG00000020176 163.76 1701.65 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
39. Hbb-y ENSMUSG00000052187 161.11 1674.12 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
40. Rpl4 ENSMUSG00000032399 158.47 1646.68 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Eif4g2 ENSMUSG00000005610 157.59 1637.54 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
42. Fkbp1a ENSMUSG00000032966 155.83 1619.25 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
43. U2af2 ENSMUSG00000030435 154.07 1600.96 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
44. Banf1 ENSMUSG00000024844 153.19 1591.82 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
45. Ybx1 ENSMUSG00000028639 146.15 1518.67 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
46. Rps20 ENSMUSG00000028234 145.27 1509.52 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
47. Ywhab ENSMUSG00000018326 145.27 1509.52 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
48. Eef1b2 ENSMUSG00000025967 144.39 1500.38 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Rrm2 ENSMUSG00000020649 141.75 1472.94 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
50. Pcbp1 ENSMUSG00000051695 139.98 1454.55 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
51. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 139.10 1445.41 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
52. Set ENSMUSG00000054766 134.70 1399.69 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
53. Rpl18a ENSMUSG00000045128 132.06 1372.25 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
54. Meg3 ENSMUSG00000021268 130.30 1353.97 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
55. Ngfrap1 128.54 1335.68 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
56. Myl6 ENSMUSG00000090841 127.66 1326.53 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
57. Tecr ENSMUSG00000031708 127.66 1326.53 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
58. Ago2 ENSMUSG00000036698 125.90 1308.24 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
59. Trim28 ENSMUSG00000005566 124.14 1289.96 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
60. Ddx39b ENSMUSG00000019432 117.97 1225.84 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
61. Pbx1 ENSMUSG00000052534 114.45 1189.27 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
62. Cdk4 ENSMUSG00000006728 113.57 1180.12 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
63. Fscn1 ENSMUSG00000029581 113.57 1180.12 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
64. Rpl23 ENSMUSG00000071415 113.57 1180.12 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
65. Rps5 ENSMUSG00000012848 112.69 1170.98 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
66. Cox8a ENSMUSG00000035885 110.05 1143.55 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
67. Anp32b ENSMUSG00000028333 108.29 1125.26 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
68. Rplp1 ENSMUSG00000007892 107.41 1116.11 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
69. Sfrp1 ENSMUSG00000031548 106.53 1106.97 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
70. Erdr1 105.65 1097.82 erythroid differentiation regulator 1, transcript variant 1, non-coding
71. Hsp90aa1 ENSMUSG00000021270 105.65 1097.82 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
72. Hba-x ENSMUSG00000055609 103.89 1079.54 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
73. Ran ENSMUSG00000029430 100.37 1042.96 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
74. Marcksl1 ENSMUSG00000047945 97.73 1015.53 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
75. Hmgn1 ENSMUSG00000040681 96.84 1006.28 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
76. Pabpc1 ENSMUSG00000022283 96.84 1006.28 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
77. Gm5805 ENSMUSG00000061848 95.96 997.13 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
78. Peg3 ENSMUSG00000002265 95.96 997.13 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
79. Sf3b4 ENSMUSG00000068856 95.96 997.13 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
80. Hnrnpa0 ENSMUSG00000007836 95.08 987.99 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
81. Rps3a1 ENSMUSG00000028081 95.08 987.99 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
82. Rpl39-ps ENSMUSG00000036305 94.20 978.85 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
83. Rpl8 ENSMUSG00000003970 94.20 978.85 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
84. Malat1 ENSMUSG00000092341 92.44 960.56 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
85. Rps4x ENSMUSG00000031320 92.44 960.56 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
86. Arid1a ENSMUSG00000007880 88.92 923.98 AT rich interactive domain 1A (SWI-like) [Source:MGI Symbol;Acc:MGI:1935147]
87. Rps15 ENSMUSG00000063457 87.16 905.69 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
88. mt-Rnr1 ENSMUSG00000064337 87.16 905.69 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
89. Ywhae ENSMUSG00000020849 86.28 896.55 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
90. Igfbp4 ENSMUSG00000017493 85.40 887.40 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
91. Rpl37 ENSMUSG00000041841 85.40 887.40 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
92. Rps9 ENSMUSG00000006333 85.40 887.40 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
93. Tsc22d1 ENSMUSG00000022010 85.40 887.40 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
94. Gm5963 ENSMUSG00000052192 83.64 869.12 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
95. Hba-a1 ENSMUSG00000069919 83.64 869.12 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
96. Ywhaz ENSMUSG00000022285 83.64 869.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
97. Fkbp4 ENSMUSG00000030357 82.76 859.97 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
98. Gm14586 ENSMUSG00000083621 82.76 859.97 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
99. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 81.88 850.83 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
100. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 80.12 832.54 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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