Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s48.

Sample reads: 96,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3671.90 38152.21 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3284.69 34128.97 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2673.24 27775.81 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2392.25 24856.24 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2252.44 23403.57 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2145.31 22290.45 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1107.15 11503.64 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 983.23 10216.07 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. H19 ENSMUSG00000000031 894.71 9296.32 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Actb ENSMUSG00000029580 842.96 8758.62 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd3 ENSMUSG00000064360 768.52 7985.17 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Mdk ENSMUSG00000027239 760.80 7904.95 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Rnr2 ENSMUSG00000064339 720.85 7489.86 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. Hmga2 ENSMUSG00000056758 640.05 6650.32 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
15. Igf2 ENSMUSG00000048583 591.48 6145.66 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Eef1a1 ENSMUSG00000037742 562.43 5843.83 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Nd5 ENSMUSG00000064367 535.19 5560.79 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. mt-Co3 ENSMUSG00000064358 377.68 3924.22 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Rpsa ENSMUSG00000032518 370.41 3848.68 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Gm13340 ENSMUSG00000083563 342.27 3556.29 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Hbb-y ENSMUSG00000052187 335.46 3485.54 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
22. mt-Rnr1 ENSMUSG00000064337 325.02 3377.06 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
23. Cfl1 ENSMUSG00000056201 320.93 3334.56 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Tubb5 ENSMUSG00000001525 258.74 2688.39 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Pkm ENSMUSG00000032294 245.58 2551.65 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Tuba1b ENSMUSG00000023004 236.05 2452.63 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Gm10800 ENSMUSG00000075014 233.78 2429.05 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
28. Hsp90ab1 ENSMUSG00000023944 227.42 2362.97 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Npm1 ENSMUSG00000057113 226.51 2353.51 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
30. Set ENSMUSG00000054766 226.51 2353.51 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
31. Nedd4 ENSMUSG00000032216 206.09 2141.34 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Rps26 ENSMUSG00000025362 202.00 2098.84 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
33. Hba-x ENSMUSG00000055609 195.65 2032.87 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
34. Eif5a ENSMUSG00000078812 192.92 2004.50 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Hnrnpc ENSMUSG00000060373 192.02 1995.15 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
36. Ubb ENSMUSG00000019505 182.48 1896.03 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
37. Atp5g3 ENSMUSG00000018770 177.49 1844.18 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
38. Tpt1 ENSMUSG00000060126 177.49 1844.18 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Trim28 ENSMUSG00000005566 175.22 1820.59 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
40. Col1a1 ENSMUSG00000001506 171.59 1782.87 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
41. Eif4g2 ENSMUSG00000005610 167.05 1735.70 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
42. Hba-a1 ENSMUSG00000069919 158.88 1650.81 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
43. Chchd2 ENSMUSG00000070493 157.52 1636.68 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Grb10 ENSMUSG00000020176 157.06 1631.90 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Col3a1 ENSMUSG00000026043 156.15 1622.45 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
46. U2af2 ENSMUSG00000030435 153.88 1598.86 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
47. Pbx1 ENSMUSG00000052534 151.62 1575.38 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
48. Rpl18a ENSMUSG00000045128 148.89 1547.01 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
49. Rpl4 ENSMUSG00000032399 147.98 1537.56 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
50. Fkbp1a ENSMUSG00000032966 141.63 1471.58 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
51. Rrm2 ENSMUSG00000020649 141.63 1471.58 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
52. Banf1 ENSMUSG00000024844 140.27 1457.45 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
53. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 140.27 1457.45 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
54. Eef1b2 ENSMUSG00000025967 137.54 1429.08 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Ywhab ENSMUSG00000018326 133.46 1386.69 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
56. Ybx1 ENSMUSG00000028639 132.55 1377.24 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
57. Hbb-bh1 ENSMUSG00000052217 131.64 1367.78 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
58. Sfrp1 ENSMUSG00000031548 131.64 1367.78 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
59. Ago2 ENSMUSG00000036698 130.73 1358.33 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
60. Rps20 ENSMUSG00000028234 123.92 1287.57 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
61. Ddx39b ENSMUSG00000019432 120.29 1249.85 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
62. Ngfrap1 119.39 1240.50 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
63. Sf3b4 ENSMUSG00000068856 117.57 1221.59 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
64. Rplp1 ENSMUSG00000007892 114.85 1193.33 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
65. Pabpc1 ENSMUSG00000022283 113.03 1174.42 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Rpl23 ENSMUSG00000071415 113.03 1174.42 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
67. Meg3 ENSMUSG00000021268 112.58 1169.74 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
68. Paics ENSMUSG00000029247 111.67 1160.29 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
69. Tecr ENSMUSG00000031708 110.76 1150.83 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
70. Gm14303 ENSMUSG00000081344 110.31 1146.16 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
71. Ran ENSMUSG00000029430 109.40 1136.70 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
72. Gm5805 ENSMUSG00000061848 106.22 1103.66 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
73. Hsp90aa1 ENSMUSG00000021270 106.22 1103.66 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
74. Rps5 ENSMUSG00000012848 106.22 1103.66 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
75. Hmgn1 ENSMUSG00000040681 104.86 1089.53 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
76. Peg3 ENSMUSG00000002265 104.86 1089.53 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
77. Rps4x ENSMUSG00000031320 98.96 1028.23 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
78. Myl6 ENSMUSG00000090841 98.50 1023.45 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
79. Ccnd2 ENSMUSG00000000184 96.69 1004.64 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
80. Lbh ENSMUSG00000024063 94.42 981.05 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
81. Rps3a1 ENSMUSG00000028081 93.96 976.27 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
82. Ywhae ENSMUSG00000020849 93.51 971.60 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
83. Anp32b ENSMUSG00000028333 93.06 966.92 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
84. Ldha ENSMUSG00000063229 93.06 966.92 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
85. Marcksl1 ENSMUSG00000047945 92.60 962.14 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
86. Rpl8 ENSMUSG00000003970 92.15 957.47 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
87. Rpl37 ENSMUSG00000041841 91.70 952.79 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
88. Cox8a ENSMUSG00000035885 88.52 919.75 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
89. Sub1 ENSMUSG00000022205 88.52 919.75 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
90. Jund ENSMUSG00000071076, ENSMUSG00000110974 88.06 914.97 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
91. Fscn1 ENSMUSG00000029581 87.61 910.30 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
92. Pcbp1 ENSMUSG00000051695 87.16 905.62 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
93. Wbp5 85.34 886.71 WW domain binding protein 5
94. Hnrnpa0 ENSMUSG00000007836 84.89 882.03 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
95. Ywhaz ENSMUSG00000022285 84.43 877.25 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
96. Eef2 ENSMUSG00000034994 83.52 867.80 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
97. Gm5963 ENSMUSG00000052192 83.07 863.12 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
98. Kpnb1 ENSMUSG00000001440 83.07 863.12 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
99. Rpl32 ENSMUSG00000057841 83.07 863.12 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
100. Cdk4 ENSMUSG00000006728 81.71 848.99 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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