Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s47.

Sample reads: 96,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4601.78 47817.54 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3853.92 40046.46 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd1 ENSMUSG00000064341 2902.89 30164.21 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 2647.55 27510.95 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd4 ENSMUSG00000064363 2297.33 23871.78 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 2196.93 22828.51 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd2 ENSMUSG00000064345 1185.82 12321.97 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
8. mt-Co1 ENSMUSG00000064351 1181.87 12280.93 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Rnr2 ENSMUSG00000064339 1132.07 11763.45 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. Actb ENSMUSG00000029580 921.78 9578.31 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. Hmga2 ENSMUSG00000056758 844.31 8773.31 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
12. H19 ENSMUSG00000000031 792.92 8239.31 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Nd3 ENSMUSG00000064360 774.74 8050.40 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Mdk ENSMUSG00000027239 726.51 7549.24 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. mt-Nd5 ENSMUSG00000064367 641.13 6662.04 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
16. mt-Co3 ENSMUSG00000064358 504.37 5240.96 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Igf2 ENSMUSG00000048583 467.21 4854.82 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Eef1a1 ENSMUSG00000037742 464.84 4830.20 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Gm13340 ENSMUSG00000083563 378.67 3934.80 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Rpsa ENSMUSG00000032518 347.05 3606.23 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Pkm ENSMUSG00000032294 301.99 3138.01 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
22. Cfl1 ENSMUSG00000056201 289.34 3006.56 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Set ENSMUSG00000054766 256.93 2669.78 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
24. Npm1 ENSMUSG00000057113 249.02 2587.59 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Tubb5 ENSMUSG00000001525 249.02 2587.59 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Tuba1b ENSMUSG00000023004 228.47 2374.05 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Hbb-y ENSMUSG00000052187 205.54 2135.79 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
28. Rpl18a ENSMUSG00000045128 202.38 2102.95 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
29. mt-Rnr1 ENSMUSG00000064337 200.80 2086.53 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
30. Rps26 ENSMUSG00000025362 196.06 2037.28 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
31. Rpl4 ENSMUSG00000032399 193.68 2012.55 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Hnrnpc ENSMUSG00000060373 188.15 1955.08 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
33. Nedd4 ENSMUSG00000032216 186.57 1938.67 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
34. Ubb ENSMUSG00000019505 181.04 1881.20 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Rps20 ENSMUSG00000028234 179.45 1864.68 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
36. Ywhab ENSMUSG00000018326 177.08 1840.06 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
37. Hsp90ab1 ENSMUSG00000023944 173.13 1799.01 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Rpl23 ENSMUSG00000071415 155.74 1618.31 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
39. Pbx1 ENSMUSG00000052534 153.37 1593.68 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
40. Gm10800 ENSMUSG00000075014 148.62 1544.32 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
41. Chchd2 ENSMUSG00000070493 147.83 1536.12 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
42. Banf1 ENSMUSG00000024844 146.25 1519.70 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
43. Tpt1 ENSMUSG00000060126 144.67 1503.28 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
44. Wbp5 140.72 1462.24 WW domain binding protein 5
45. Myl6 ENSMUSG00000090841 139.93 1454.03 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
46. Peg3 ENSMUSG00000002265 139.14 1445.82 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
47. Grb10 ENSMUSG00000020176 138.35 1437.61 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
48. Col3a1 ENSMUSG00000026043 135.97 1412.88 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
49. Eif4g2 ENSMUSG00000005610 130.44 1355.41 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
50. Fkbp1a ENSMUSG00000032966 130.44 1355.41 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
51. Rpl37 ENSMUSG00000041841 128.86 1339.00 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
52. Ybx1 ENSMUSG00000028639 128.86 1339.00 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
53. Sfrp1 ENSMUSG00000031548 127.28 1322.58 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
54. Col1a1 ENSMUSG00000001506 126.49 1314.37 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
55. Eif5a ENSMUSG00000078812 126.49 1314.37 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
56. U2af2 ENSMUSG00000030435 123.33 1281.53 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
57. Ago2 ENSMUSG00000036698 122.54 1273.33 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
58. 2810417H13Rik 121.74 1265.01 RIKEN cDNA 2810417H13 gene
59. Pabpc1 ENSMUSG00000022283 120.95 1256.80 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
60. Atp5g3 ENSMUSG00000018770 117.79 1223.97 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
61. Eef1b2 ENSMUSG00000025967 117.00 1215.76 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
62. Gm14586 ENSMUSG00000083621 116.21 1207.55 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
63. Hmgn1 ENSMUSG00000040681 116.21 1207.55 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
64. Rps5 ENSMUSG00000012848 116.21 1207.55 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
65. Ran ENSMUSG00000029430 114.63 1191.13 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
66. Rpl39-ps ENSMUSG00000036305 114.63 1191.13 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
67. Rps3a1 ENSMUSG00000028081 114.63 1191.13 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
68. Rps4x ENSMUSG00000031320 112.26 1166.50 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Hsp90aa1 ENSMUSG00000021270 111.47 1158.30 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
70. Gm14303 ENSMUSG00000081344 110.68 1150.09 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
71. Ndufa12 ENSMUSG00000020022 109.89 1141.88 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
72. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 109.10 1133.67 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
73. Cox8a ENSMUSG00000035885 106.72 1108.94 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
74. Paics ENSMUSG00000029247 106.72 1108.94 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
75. Rplp1 ENSMUSG00000007892 104.35 1084.31 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
76. Malat1 ENSMUSG00000092341 100.40 1043.27 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
77. Trim28 ENSMUSG00000005566 100.40 1043.27 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
78. Rpl32 ENSMUSG00000057841 99.61 1035.06 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
79. Gm5805 ENSMUSG00000061848 96.45 1002.22 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
80. Crabp1 ENSMUSG00000032291 94.87 985.80 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
81. Ngfrap1 92.49 961.07 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
82. Ccnd2 ENSMUSG00000000184 90.91 944.65 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
83. Tecr ENSMUSG00000031708 90.91 944.65 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
84. Rpl26 ENSMUSG00000060938 89.33 928.24 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
85. Marcksl1 ENSMUSG00000047945 86.17 895.40 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
86. Pcbp1 ENSMUSG00000051695 86.17 895.40 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
87. Anp32b ENSMUSG00000028333 85.38 887.19 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
88. Top2a ENSMUSG00000020914 85.38 887.19 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
89. Hba-x ENSMUSG00000055609 83.01 862.56 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
90. Rpl8 ENSMUSG00000003970 81.43 846.15 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
91. Son ENSMUSG00000022961 81.43 846.15 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
92. Calm1 ENSMUSG00000001175 80.64 837.94 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
93. Cdk4 ENSMUSG00000006728 80.64 837.94 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
94. Lamp1 ENSMUSG00000031447 80.64 837.94 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
95. Mapre1 ENSMUSG00000027479 80.64 837.94 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
96. Serbp1 ENSMUSG00000036371 80.64 837.94 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
97. Rrm2 ENSMUSG00000020649 76.68 796.79 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
98. Ddx39b ENSMUSG00000019432 75.89 788.58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
99. Gm15459 ENSMUSG00000100801 75.10 780.37 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
100. Rpl41 ENSMUSG00000093674 75.10 780.37 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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