Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s43.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4900.72 50913.37 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3475.23 36104.02 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd1 ENSMUSG00000064341 3090.16 32103.54 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Nd4 ENSMUSG00000064363 2800.75 29096.87 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 2734.98 28413.59 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Co2 ENSMUSG00000064354 2532.88 26313.98 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1319.06 13703.66 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1148.05 11927.04 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Nd2 ENSMUSG00000064345 987.80 10262.21 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd3 ENSMUSG00000064360 907.67 9429.74 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Actb ENSMUSG00000029580 823.96 8560.09 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Co3 ENSMUSG00000064358 685.24 7118.93 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Hmga2 ENSMUSG00000056758 679.26 7056.80 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
14. H19 ENSMUSG00000000031 674.48 7007.14 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Mdk ENSMUSG00000027239 532.17 5528.69 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Igf2 ENSMUSG00000048583 478.35 4969.56 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Eef1a1 ENSMUSG00000037742 466.39 4845.31 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Gm13340 ENSMUSG00000083563 448.46 4659.03 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Gm10800 ENSMUSG00000075014 437.69 4547.14 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
20. mt-Nd5 ENSMUSG00000064367 400.62 4162.02 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Tuba1b ENSMUSG00000023004 326.48 3391.79 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Rpsa ENSMUSG00000032518 306.15 3180.58 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
23. Npm1 ENSMUSG00000057113 304.95 3168.11 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Tubb5 ENSMUSG00000001525 247.55 2571.79 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Set ENSMUSG00000054766 229.61 2385.41 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
26. Rps20 ENSMUSG00000028234 222.43 2310.82 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
27. Pkm ENSMUSG00000032294 216.45 2248.69 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Rpl4 ENSMUSG00000032399 205.69 2136.90 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
29. Hnrnpc ENSMUSG00000060373 200.91 2087.25 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
30. Ubb ENSMUSG00000019505 199.71 2074.78 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. mt-Rnr1 ENSMUSG00000064337 197.32 2049.95 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
32. Tpt1 ENSMUSG00000060126 181.77 1888.40 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Ywhab ENSMUSG00000018326 181.77 1888.40 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
34. Rpl18a ENSMUSG00000045128 179.38 1863.57 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
35. Pbx1 ENSMUSG00000052534 174.60 1813.91 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
36. Eif4g2 ENSMUSG00000005610 168.62 1751.79 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Hbb-y ENSMUSG00000052187 167.42 1739.32 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
38. Rps26 ENSMUSG00000025362 166.23 1726.96 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
39. Rpl23 ENSMUSG00000071415 165.03 1714.49 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Chchd2 ENSMUSG00000070493 163.84 1702.13 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Nedd4 ENSMUSG00000032216 160.25 1664.83 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
42. Rplp1 ENSMUSG00000007892 159.05 1652.36 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
43. Hsp90aa1 ENSMUSG00000021270 157.86 1640.00 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
44. Grb10 ENSMUSG00000020176 154.27 1602.70 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Cfl1 ENSMUSG00000056201 153.07 1590.24 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
46. Banf1 ENSMUSG00000024844 150.68 1565.41 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
47. Rps5 ENSMUSG00000012848 145.90 1515.75 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
48. Gm14303 ENSMUSG00000081344 139.92 1453.62 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
49. Wbp5 138.72 1441.16 WW domain binding protein 5
50. Hsp90ab1 ENSMUSG00000023944 136.33 1416.33 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
51. Rps4x ENSMUSG00000031320 135.13 1403.86 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
52. Fkbp1a ENSMUSG00000032966 133.94 1391.50 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
53. Ndufa12 ENSMUSG00000020022 132.74 1379.03 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
54. Ran ENSMUSG00000029430 132.74 1379.03 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
55. Eef1b2 ENSMUSG00000025967 131.55 1366.67 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
56. Myl6 ENSMUSG00000090841 127.96 1329.37 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
57. Peg3 ENSMUSG00000002265 124.37 1292.07 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
58. Gm5805 ENSMUSG00000061848 121.98 1267.25 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
59. Cox8a ENSMUSG00000035885 117.20 1217.59 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
60. Atp5g3 ENSMUSG00000018770 116.00 1205.12 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
61. Paics ENSMUSG00000029247 116.00 1205.12 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
62. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 114.80 1192.65 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
63. Ago2 ENSMUSG00000036698 113.61 1180.29 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
64. Son ENSMUSG00000022961 113.61 1180.29 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
65. Rpl32 ENSMUSG00000057841 111.22 1155.46 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
66. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 111.22 1155.46 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
67. Ybx1 ENSMUSG00000028639 111.22 1155.46 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
68. Rps3a1 ENSMUSG00000028081 110.02 1142.99 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
69. Eif5a ENSMUSG00000078812 106.43 1105.70 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
70. Hmgn1 ENSMUSG00000040681 101.65 1056.04 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
71. Cdk4 ENSMUSG00000006728 100.45 1043.57 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
72. Rpl37 ENSMUSG00000041841 100.45 1043.57 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
73. 2810417H13Rik 99.26 1031.21 RIKEN cDNA 2810417H13 gene
74. Gm5963 ENSMUSG00000052192 99.26 1031.21 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
75. Gpc3 ENSMUSG00000055653 99.26 1031.21 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
76. Rpl8 ENSMUSG00000003970 99.26 1031.21 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
77. Gm14586 ENSMUSG00000083621 98.06 1018.74 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
78. Pabpc1 ENSMUSG00000022283 96.87 1006.38 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
79. Ngfrap1 95.67 993.91 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
80. Rpl39-ps ENSMUSG00000036305 94.47 981.44 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
81. Flrt3 ENSMUSG00000051379 92.08 956.62 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
82. Sfrp1 ENSMUSG00000031548 90.89 944.25 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
83. Serbp1 ENSMUSG00000036371 89.69 931.79 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
84. Gm8292 ENSMUSG00000100215 88.50 919.42 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
85. Scd2 ENSMUSG00000025203 88.50 919.42 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
86. Calm1 ENSMUSG00000001175 87.30 906.96 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
87. Rrm2 ENSMUSG00000020649 87.30 906.96 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
88. Tmpo ENSMUSG00000019961 87.30 906.96 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
89. Rpl26 ENSMUSG00000060938 86.10 894.49 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
90. Col3a1 ENSMUSG00000026043 84.91 882.13 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
91. Lamp1 ENSMUSG00000031447 84.91 882.13 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
92. Ddx39b ENSMUSG00000019432 83.71 869.66 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
93. Sub1 ENSMUSG00000022205 83.71 869.66 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
94. Cltc ENSMUSG00000047126 82.52 857.30 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
95. Mapre1 ENSMUSG00000027479 82.52 857.30 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
96. Marcks ENSMUSG00000069662 80.12 832.36 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
97. Top2a ENSMUSG00000020914 80.12 832.36 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
98. Caprin1 ENSMUSG00000027184 78.93 820.00 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
99. Cdkn1c ENSMUSG00000037664 78.93 820.00 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
100. Marcksl1 ENSMUSG00000047945 78.93 820.00 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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