Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E10_5_slice_2, section s42.

Sample reads: 96,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4436.46 46099.75 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 3200.51 33256.85 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 3021.76 31399.44 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2768.95 28772.47 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2761.29 28692.87 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2641.27 27445.73 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1411.29 14664.87 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1061.45 11029.64 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. H19 ENSMUSG00000000031 1023.14 10631.56 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Nd2 ENSMUSG00000064345 1011.23 10507.80 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Nd3 ENSMUSG00000064360 933.77 9702.91 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Actb ENSMUSG00000029580 846.94 8800.65 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Eef1a1 ENSMUSG00000037742 583.07 6058.75 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Mdk ENSMUSG00000027239 582.22 6049.91 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Igf2 ENSMUSG00000048583 543.92 5651.93 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Hmga2 ENSMUSG00000056758 525.19 5457.31 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. Gm13340 ENSMUSG00000083563 458.80 4767.44 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Co3 ENSMUSG00000064358 458.80 4767.44 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. mt-Nd5 ENSMUSG00000064367 454.54 4723.18 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Rpsa ENSMUSG00000032518 404.32 4201.33 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Cfl1 ENSMUSG00000056201 306.43 3184.15 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Gm10800 ENSMUSG00000075014 300.47 3122.22 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
23. Npm1 ENSMUSG00000057113 269.83 2803.83 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Set ENSMUSG00000054766 229.82 2388.09 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
25. Tuba1b ENSMUSG00000023004 225.57 2343.92 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Rps26 ENSMUSG00000025362 214.50 2228.89 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
27. Pkm ENSMUSG00000032294 208.54 2166.96 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Eif4g2 ENSMUSG00000005610 200.03 2078.53 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
29. mt-Rnr1 ENSMUSG00000064337 200.03 2078.53 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
30. Hnrnpc ENSMUSG00000060373 192.37 1998.94 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
31. Pbx1 ENSMUSG00000052534 181.31 1884.01 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
32. Ubb ENSMUSG00000019505 179.60 1866.24 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Hsp90ab1 ENSMUSG00000023944 177.05 1839.75 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Nedd4 ENSMUSG00000032216 170.24 1768.98 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
35. Ywhab ENSMUSG00000018326 169.39 1760.15 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
36. Tubb5 ENSMUSG00000001525 166.84 1733.65 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
37. Acta2 ENSMUSG00000035783 165.98 1724.72 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
38. Rpl4 ENSMUSG00000032399 164.28 1707.05 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
39. Tpt1 ENSMUSG00000060126 160.88 1671.72 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Chchd2 ENSMUSG00000070493 160.03 1662.89 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Rpl23 ENSMUSG00000071415 158.32 1645.12 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Myl6 ENSMUSG00000090841 149.81 1556.69 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
43. Eef1b2 ENSMUSG00000025967 148.96 1547.86 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Grb10 ENSMUSG00000020176 145.56 1512.53 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Hsp90aa1 ENSMUSG00000021270 142.15 1477.10 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
46. Rplp1 ENSMUSG00000007892 136.19 1415.17 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
47. Rpl18a ENSMUSG00000045128 135.34 1406.33 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
48. Rps20 ENSMUSG00000028234 135.34 1406.33 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Rrm2 ENSMUSG00000020649 133.64 1388.67 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
50. Atp5g3 ENSMUSG00000018770 132.79 1379.84 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
51. Ago2 ENSMUSG00000036698 128.53 1335.57 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
52. Ngfrap1 127.68 1326.74 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
53. Peg3 ENSMUSG00000002265 127.68 1326.74 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
54. Banf1 ENSMUSG00000024844 126.83 1317.90 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
55. Fkbp1a ENSMUSG00000032966 124.28 1291.41 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
56. Hbb-y ENSMUSG00000052187 124.28 1291.41 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
57. Rps5 ENSMUSG00000012848 122.57 1273.64 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
58. Tecr ENSMUSG00000031708 118.32 1229.48 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
59. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 117.47 1220.64 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
60. Pabpc1 ENSMUSG00000022283 116.61 1211.71 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
61. Rpl37 ENSMUSG00000041841 115.76 1202.88 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
62. Rps3a1 ENSMUSG00000028081 114.06 1185.21 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
63. Eif5a ENSMUSG00000078812 113.21 1176.38 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
64. 2810417H13Rik 111.51 1158.71 RIKEN cDNA 2810417H13 gene
65. Wbp5 110.66 1149.88 WW domain binding protein 5
66. Ybx1 ENSMUSG00000028639 110.66 1149.88 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
67. Rpl32 ENSMUSG00000057841 108.95 1132.11 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
68. Rps4x ENSMUSG00000031320 107.25 1114.45 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Gm5805 ENSMUSG00000061848 106.40 1105.61 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
70. Paics ENSMUSG00000029247 106.40 1105.61 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
71. Gm14303 ENSMUSG00000081344 103.85 1079.12 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
72. Gpc3 ENSMUSG00000055653 103.85 1079.12 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
73. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 103.85 1079.12 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
74. U2af2 ENSMUSG00000030435 103.85 1079.12 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
75. Trim28 ENSMUSG00000005566 102.14 1061.35 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
76. Gm14586 ENSMUSG00000083621 101.29 1052.52 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
77. Ddx39b ENSMUSG00000019432 100.44 1043.68 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
78. Ran ENSMUSG00000029430 100.44 1043.68 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
79. Son ENSMUSG00000022961 98.74 1026.02 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
80. Hmgn1 ENSMUSG00000040681 97.89 1017.19 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
81. Ndufa12 ENSMUSG00000020022 97.89 1017.19 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
82. Hnrnpa0 ENSMUSG00000007836 94.48 981.75 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
83. Lamp1 ENSMUSG00000031447 94.48 981.75 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
84. Pcbp1 ENSMUSG00000051695 94.48 981.75 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
85. Meg3 ENSMUSG00000021268 92.78 964.09 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
86. Rpl39-ps ENSMUSG00000036305 91.93 955.25 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
87. Sfrp1 ENSMUSG00000031548 91.93 955.25 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
88. Kpnb1 ENSMUSG00000001440 91.08 946.42 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
89. Rpl26 ENSMUSG00000060938 90.23 937.59 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
90. Rpl8 ENSMUSG00000003970 86.82 902.16 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
91. Tmsb4x ENSMUSG00000049775 86.82 902.16 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
92. Col1a1 ENSMUSG00000001506 85.12 884.49 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
93. Gm15459 ENSMUSG00000100801 85.12 884.49 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
94. Col3a1 ENSMUSG00000026043 83.42 866.83 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
95. Gm5963 ENSMUSG00000052192 83.42 866.83 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
96. Serbp1 ENSMUSG00000036371 83.42 866.83 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
97. Fkbp4 ENSMUSG00000030357 81.72 849.16 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
98. Cox8a ENSMUSG00000035885 80.86 840.23 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
99. Hnrnpa2b1 ENSMUSG00000004980 80.86 840.23 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
100. Sub1 ENSMUSG00000022205 79.16 822.56 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA