Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s41.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4759.29 49448.52 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2917.46 30312.10 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2739.66 28464.78 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Co2 ENSMUSG00000064354 2607.42 27090.82 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2566.93 26670.13 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 2491.00 25881.23 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1411.59 14666.27 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1065.49 11070.33 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd2 ENSMUSG00000064345 1001.59 10406.41 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd3 ENSMUSG00000064360 998.43 10373.58 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Actb ENSMUSG00000029580 861.13 8947.05 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Eef1a1 ENSMUSG00000037742 641.57 6665.84 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Mdk ENSMUSG00000027239 639.04 6639.56 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Co3 ENSMUSG00000064358 633.98 6586.99 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. mt-Rnr2 ENSMUSG00000064339 606.78 6304.38 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. Igf2 ENSMUSG00000048583 571.34 5936.16 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm13340 ENSMUSG00000083563 428.98 4457.06 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Rpsa ENSMUSG00000032518 400.51 4161.26 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. mt-Nd5 ENSMUSG00000064367 389.75 4049.46 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Tuba1b ENSMUSG00000023004 344.20 3576.20 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Pkm ENSMUSG00000032294 331.54 3444.67 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
22. Tubb5 ENSMUSG00000001525 316.99 3293.49 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Hmga2 ENSMUSG00000056758 296.74 3083.10 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Cfl1 ENSMUSG00000056201 287.25 2984.50 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Npm1 ENSMUSG00000057113 275.86 2866.16 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Rps26 ENSMUSG00000025362 268.27 2787.30 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
27. Rpl4 ENSMUSG00000032399 251.82 2616.38 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
28. Rpl18a ENSMUSG00000045128 216.39 2248.27 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
29. Hnrnpc ENSMUSG00000060373 208.16 2162.76 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
30. Rps20 ENSMUSG00000028234 192.98 2005.04 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
31. Tpt1 ENSMUSG00000060126 192.98 2005.04 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Ubb ENSMUSG00000019505 192.35 1998.50 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Chchd2 ENSMUSG00000070493 191.08 1985.30 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Rpl23 ENSMUSG00000071415 181.59 1886.70 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
35. Nedd4 ENSMUSG00000032216 177.16 1840.67 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
36. Eif4g2 ENSMUSG00000005610 169.57 1761.81 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Ywhab ENSMUSG00000018326 163.24 1696.05 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
38. Rpl37 ENSMUSG00000041841 161.98 1682.96 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
39. Eif5a ENSMUSG00000078812 157.55 1636.93 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. Hsp90aa1 ENSMUSG00000021270 155.02 1610.64 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Grb10 ENSMUSG00000020176 149.32 1551.42 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
42. Hsp90ab1 ENSMUSG00000023944 146.79 1525.13 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
43. Trim28 ENSMUSG00000005566 146.79 1525.13 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
44. Atp5g3 ENSMUSG00000018770 144.89 1505.39 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Gm14303 ENSMUSG00000081344 142.36 1479.11 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
46. Paics ENSMUSG00000029247 139.20 1446.27 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
47. Rps5 ENSMUSG00000012848 137.93 1433.08 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
48. Rps4x ENSMUSG00000031320 137.30 1426.53 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
49. Itga6 ENSMUSG00000027111 134.77 1400.25 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
50. Rplp1 ENSMUSG00000007892 132.87 1380.51 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
51. Ndufa12 ENSMUSG00000020022 129.71 1347.67 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
52. mt-Rnr1 ENSMUSG00000064337 129.71 1347.67 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
53. U2af2 ENSMUSG00000030435 129.07 1341.02 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
54. Gm5805 ENSMUSG00000061848 128.44 1334.48 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
55. Eef1b2 ENSMUSG00000025967 127.18 1321.39 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
56. Fkbp1a ENSMUSG00000032966 124.01 1288.45 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Banf1 ENSMUSG00000024844 122.11 1268.71 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
58. Gm10800 ENSMUSG00000075014 122.11 1268.71 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
59. Cdk4 ENSMUSG00000006728 120.85 1255.62 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
60. Acta2 ENSMUSG00000035783 118.95 1235.88 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
61. Cox8a ENSMUSG00000035885 118.95 1235.88 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
62. Rpl39-ps ENSMUSG00000036305 118.32 1229.33 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
63. Ran ENSMUSG00000029430 116.42 1209.59 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
64. Ngfrap1 113.89 1183.31 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
65. Ddx39b ENSMUSG00000019432 113.26 1176.76 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
66. Set ENSMUSG00000054766 113.26 1176.76 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
67. Myl6 ENSMUSG00000090841 110.09 1143.82 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
68. Pbx1 ENSMUSG00000052534 109.46 1137.28 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
69. Rpl32 ENSMUSG00000057841 109.46 1137.28 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
70. Rrm2 ENSMUSG00000020649 106.30 1104.45 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
71. Peg3 ENSMUSG00000002265 104.40 1084.70 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
72. Tecr ENSMUSG00000031708 104.40 1084.70 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
73. Gm14586 ENSMUSG00000083621 103.77 1078.16 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
74. Gm5963 ENSMUSG00000052192 102.50 1064.96 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
75. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 98.70 1025.48 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
76. Hbb-y ENSMUSG00000052187 96.81 1005.85 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
77. Hmgn1 ENSMUSG00000040681 96.81 1005.85 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
78. Lamp1 ENSMUSG00000031447 96.17 999.20 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
79. Eef2 ENSMUSG00000034994 95.54 992.65 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
80. Ybx1 ENSMUSG00000028639 94.91 986.10 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
81. Crabp1 ENSMUSG00000032291 94.27 979.46 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
82. Pabpc1 ENSMUSG00000022283 93.64 972.91 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
83. Gm10073 ENSMUSG00000060019 92.38 959.82 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
84. Ldha ENSMUSG00000063229 92.38 959.82 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
85. 2810417H13Rik 90.48 940.08 RIKEN cDNA 2810417H13 gene
86. Rps3a1 ENSMUSG00000028081 90.48 940.08 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
87. Rps15 ENSMUSG00000063457 89.21 926.88 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
88. Gm9846 Gm9846 88.58 920.34
89. Gm8292 ENSMUSG00000100215 87.31 907.14 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
90. Rpl26 ENSMUSG00000060938 86.68 900.60 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
91. Rpl41 ENSMUSG00000093674 86.05 894.05 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
92. Capns1 ENSMUSG00000001794 85.42 887.50 calpain, small subunit 1 [Source:MGI Symbol;Acc:MGI:88266]
93. Rpl8 ENSMUSG00000003970 85.42 887.50 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
94. Tsc22d1 ENSMUSG00000022010 85.42 887.50 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
95. Hnrnpa2b1 ENSMUSG00000004980 84.78 880.86 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
96. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 84.15 874.31 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
97. Fkbp4 ENSMUSG00000030357 83.52 867.76 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
98. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 83.52 867.76 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
99. Tmpo ENSMUSG00000019961 82.25 854.57 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
100. Gm2000 ENSMUSG00000078193 80.99 841.48 predicted gene 2000 [Source:MGI Symbol;Acc:MGI:3780170]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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