Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s4.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3726.19 38717.62 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2829.19 29397.19 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2057.04 21374.03 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1784.30 18540.08 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1540.66 16008.50 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1353.99 14068.87 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Rnr2 ENSMUSG00000064339 1033.97 10743.64 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 997.61 10365.84 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Hbb-y ENSMUSG00000052187 913.97 9496.76 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. Actb ENSMUSG00000029580 670.33 6965.18 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd2 ENSMUSG00000064345 669.11 6952.50 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. Eef1a1 ENSMUSG00000037742 644.87 6700.63 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. mt-Nd3 ENSMUSG00000064360 520.02 5403.36 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Rpsa ENSMUSG00000032518 459.41 4773.58 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. mt-Co3 ENSMUSG00000064358 410.92 4269.74 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Pkm ENSMUSG00000032294 386.68 4017.87 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
17. Hba-a1 ENSMUSG00000069919 372.13 3866.68 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
18. mt-Nd5 ENSMUSG00000064367 367.29 3816.39 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Mdk ENSMUSG00000027239 364.86 3791.14 midkine [Source:MGI Symbol;Acc:MGI:96949]
20. Cfl1 ENSMUSG00000056201 335.77 3488.88 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Npm1 ENSMUSG00000057113 328.50 3413.34 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tuba1b ENSMUSG00000023004 328.50 3413.34 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Gm13340 ENSMUSG00000083563 320.01 3325.12 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
24. Hbb-bh1 ENSMUSG00000052217 305.47 3174.04 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
25. Hba-x ENSMUSG00000055609 296.98 3085.82 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
26. Rps26 ENSMUSG00000025362 282.43 2934.64 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
27. Gm14303 ENSMUSG00000081344 266.68 2770.98 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
28. Set ENSMUSG00000054766 255.77 2657.62 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
29. Tubb2b ENSMUSG00000045136 235.16 2443.47 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
30. Hnrnpc ENSMUSG00000060373 224.25 2330.11 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
31. Tubb5 ENSMUSG00000001525 224.25 2330.11 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
32. Rpl4 ENSMUSG00000032399 223.04 2317.54 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Rps20 ENSMUSG00000028234 221.83 2304.96 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
34. Chchd2 ENSMUSG00000070493 218.19 2267.14 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Eif5a ENSMUSG00000078812 216.98 2254.57 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
36. Rrm2 ENSMUSG00000020649 215.76 2241.89 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
37. Rpl18a ENSMUSG00000045128 214.55 2229.32 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
38. Eif4g2 ENSMUSG00000005610 208.49 2166.35 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Ubb ENSMUSG00000019505 207.28 2153.78 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
40. Tpt1 ENSMUSG00000060126 206.07 2141.21 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
41. Nedd4 ENSMUSG00000032216 202.43 2103.38 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
42. Rplp1 ENSMUSG00000007892 202.43 2103.38 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
43. Hsp90aa1 ENSMUSG00000021270 201.22 2090.81 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
44. Ldha ENSMUSG00000063229 198.79 2065.56 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
45. Rps5 ENSMUSG00000012848 198.79 2065.56 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
46. Rpl23 ENSMUSG00000071415 197.58 2052.99 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
47. Tmsb4x ENSMUSG00000049775 197.58 2052.99 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
48. Hsp90ab1 ENSMUSG00000023944 192.73 2002.59 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
49. Rpl37 ENSMUSG00000041841 192.73 2002.59 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
50. H19 ENSMUSG00000000031 186.67 1939.63 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
51. Cox8a ENSMUSG00000035885 185.46 1927.05 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
52. Grb10 ENSMUSG00000020176 181.82 1889.23 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
53. Ran ENSMUSG00000029430 181.82 1889.23 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
54. Ybx1 ENSMUSG00000028639 178.19 1851.51 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
55. U2af2 ENSMUSG00000030435 174.55 1813.69 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
56. Eef1b2 ENSMUSG00000025967 173.34 1801.12 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
57. Hba-a2 ENSMUSG00000069917 170.91 1775.87 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
58. Ndufa12 ENSMUSG00000020022 161.22 1675.18 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
59. Banf1 ENSMUSG00000024844 158.79 1649.94 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
60. Atp5g3 ENSMUSG00000018770 155.16 1612.22 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
61. Rps3a1 ENSMUSG00000028081 153.94 1599.54 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
62. Rps4x ENSMUSG00000031320 152.73 1586.97 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
63. Paics ENSMUSG00000029247 150.31 1561.82 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
64. Crabp1 ENSMUSG00000032291 143.04 1486.28 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
65. mt-Rnr1 ENSMUSG00000064337 143.04 1486.28 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
66. Gm10800 ENSMUSG00000075014 138.19 1435.89 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
67. Gm5805 ENSMUSG00000061848 135.76 1410.64 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
68. Hmga2 ENSMUSG00000056758 130.91 1360.24 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
69. Ccnd2 ENSMUSG00000000184 129.70 1347.67 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
70. Ywhae ENSMUSG00000020849 128.49 1335.10 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
71. Anp32b ENSMUSG00000028333 127.28 1322.52 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
72. Rpl32 ENSMUSG00000057841 126.06 1309.85 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
73. Lamp1 ENSMUSG00000031447 120.00 1246.88 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
74. Pabpc1 ENSMUSG00000022283 117.58 1221.74 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Trim28 ENSMUSG00000005566 116.37 1209.16 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
76. Ywhab ENSMUSG00000018326 116.37 1209.16 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
77. Marcksl1 ENSMUSG00000047945 113.94 1183.91 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
78. Pcbp1 ENSMUSG00000051695 111.52 1158.77 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
79. Tuba1a ENSMUSG00000072235 111.52 1158.77 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
80. 2810417H13Rik 110.31 1146.20 RIKEN cDNA 2810417H13 gene
81. Gm2000 ENSMUSG00000078193 110.31 1146.20 predicted gene 2000 [Source:MGI Symbol;Acc:MGI:3780170]
82. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 110.31 1146.20 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
83. Crabp2 ENSMUSG00000004885 107.88 1120.95 cellular retinoic acid binding protein II [Source:MGI Symbol;Acc:MGI:88491]
84. Rpl26 ENSMUSG00000060938 107.88 1120.95 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
85. Rpl39-ps ENSMUSG00000036305 107.88 1120.95 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
86. Top2a ENSMUSG00000020914 107.88 1120.95 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
87. Son ENSMUSG00000022961 106.67 1108.37 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
88. Srsf3 ENSMUSG00000071172 106.67 1108.37 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
89. Fkbp4 ENSMUSG00000030357 105.46 1095.80 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
90. Scd2 ENSMUSG00000025203 104.25 1083.23 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
91. Cdk4 ENSMUSG00000006728 98.19 1020.26 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
92. Gm10073 ENSMUSG00000060019 98.19 1020.26 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
93. Fkbp1a ENSMUSG00000032966 95.76 995.01 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
94. Rpl8 ENSMUSG00000003970 95.76 995.01 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
95. Rps9 ENSMUSG00000006333 95.76 995.01 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
96. Trp53i11 ENSMUSG00000068735 94.55 982.44 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
97. Gm14586 ENSMUSG00000083621 93.34 969.87 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
98. Kpnb1 ENSMUSG00000001440 93.34 969.87 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
99. Sox2 ENSMUSG00000074637 93.34 969.87 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
100. Hnrnpa2b1 ENSMUSG00000004980 92.12 957.19 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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