Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s38.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4487.85 46626.11 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3508.63 36452.59 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2810.54 29199.85 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2304.95 23947.07 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2127.70 22105.55 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2087.02 21682.91 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1279.96 13298.03 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1242.19 12905.62 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. Actb ENSMUSG00000029580 1192.06 12384.80 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Rnr2 ENSMUSG00000064339 910.21 9456.54 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. mt-Nd2 ENSMUSG00000064345 897.13 9320.65 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Nd3 ENSMUSG00000064360 723.52 7516.95 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Mdk ENSMUSG00000027239 711.90 7396.22 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Igf2 ENSMUSG00000048583 682.11 7086.72 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Eef1a1 ENSMUSG00000037742 560.07 5818.80 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Hmga2 ENSMUSG00000056758 531.74 5524.46 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. mt-Co3 ENSMUSG00000064358 440.94 4581.11 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Gm13340 ENSMUSG00000083563 360.31 3743.41 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Pkm ENSMUSG00000032294 337.06 3501.85 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. Gm10800 ENSMUSG00000075014 336.33 3494.27 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
21. mt-Nd5 ENSMUSG00000064367 330.52 3433.91 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Cfl1 ENSMUSG00000056201 321.81 3343.42 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Rpsa ENSMUSG00000032518 293.48 3049.08 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
24. Tuba1b ENSMUSG00000023004 287.66 2988.62 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Npm1 ENSMUSG00000057113 278.95 2898.13 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Tubb5 ENSMUSG00000001525 244.81 2543.43 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Hbb-y ENSMUSG00000052187 241.90 2513.20 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
28. Ubb ENSMUSG00000019505 223.74 2324.53 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Rpl18a ENSMUSG00000045128 213.57 2218.87 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
30. Rps20 ENSMUSG00000028234 202.67 2105.62 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
31. Rpl37 ENSMUSG00000041841 199.77 2075.49 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
32. Tpt1 ENSMUSG00000060126 195.41 2030.19 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Pbx1 ENSMUSG00000052534 191.78 1992.48 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
34. U2af2 ENSMUSG00000030435 187.42 1947.18 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
35. Nedd4 ENSMUSG00000032216 186.69 1939.60 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
36. Rpl23 ENSMUSG00000071415 183.79 1909.47 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
37. Rpl4 ENSMUSG00000032399 181.61 1886.82 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Rps26 ENSMUSG00000025362 180.88 1879.24 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
39. Chchd2 ENSMUSG00000070493 180.15 1871.65 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Eef1b2 ENSMUSG00000025967 178.70 1856.59 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
41. Eif4g2 ENSMUSG00000005610 174.34 1811.29 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
42. Hnrnpc ENSMUSG00000060373 169.26 1758.51 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Hsp90ab1 ENSMUSG00000023944 167.80 1743.34 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
44. Set ENSMUSG00000054766 164.90 1713.21 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
45. Ywhab ENSMUSG00000018326 164.17 1705.63 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
46. Rps5 ENSMUSG00000012848 160.54 1667.92 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
47. Atp5g3 ENSMUSG00000018770 156.91 1630.20 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Eif5a ENSMUSG00000078812 148.92 1547.19 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
49. Banf1 ENSMUSG00000024844 145.28 1509.37 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
50. Myl6 ENSMUSG00000090841 143.11 1486.83 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
51. Grb10 ENSMUSG00000020176 142.38 1479.24 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
52. Ndufa12 ENSMUSG00000020022 142.38 1479.24 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
53. Rpl41 ENSMUSG00000093674 137.29 1426.36 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
54. Fkbp1a ENSMUSG00000032966 134.39 1396.23 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
55. Eef2 ENSMUSG00000034994 132.21 1373.58 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
56. 2810417H13Rik 131.48 1366.00 RIKEN cDNA 2810417H13 gene
57. Rpl32 ENSMUSG00000057841 131.48 1366.00 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
58. Rplp1 ENSMUSG00000007892 122.77 1275.51 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
59. Ybx1 ENSMUSG00000028639 122.77 1275.51 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
60. Ran ENSMUSG00000029430 122.04 1267.92 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
61. Peg3 ENSMUSG00000002265 121.31 1260.34 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
62. Ago2 ENSMUSG00000036698 119.86 1245.27 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
63. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 119.86 1245.27 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
64. Cox8a ENSMUSG00000035885 117.68 1222.63 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
65. Trim28 ENSMUSG00000005566 117.68 1222.63 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
66. mt-Rnr1 ENSMUSG00000064337 117.68 1222.63 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
67. Tecr ENSMUSG00000031708 116.95 1215.04 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
68. Hsp90aa1 ENSMUSG00000021270 116.23 1207.56 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
69. Cdkn1c ENSMUSG00000037664 114.78 1192.50 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
70. Rps4x ENSMUSG00000031320 114.78 1192.50 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
71. Lamp1 ENSMUSG00000031447 111.87 1162.26 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
72. Meg3 ENSMUSG00000021268 111.87 1162.26 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
73. Rps3a1 ENSMUSG00000028081 109.69 1139.61 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
74. Gm5805 ENSMUSG00000061848 108.96 1132.03 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
75. Hmgn1 ENSMUSG00000040681 107.51 1116.97 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
76. Pabpc1 ENSMUSG00000022283 107.51 1116.97 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
77. Pcbp1 ENSMUSG00000051695 106.06 1101.90 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
78. Paics ENSMUSG00000029247 104.61 1086.84 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
79. Ngfrap1 103.88 1079.25 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
80. Crabp1 ENSMUSG00000032291 102.43 1064.19 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
81. Anp32b ENSMUSG00000028333 101.70 1056.60 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
82. Rrm2 ENSMUSG00000020649 99.52 1033.95 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
83. Gm14586 ENSMUSG00000083621 98.79 1026.37 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
84. Cdk4 ENSMUSG00000006728 96.61 1003.72 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
85. Ldha ENSMUSG00000063229 96.61 1003.72 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
86. Gm17132 ENSMUSG00000061331 95.89 996.24 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
87. Hba-a1 ENSMUSG00000069919 95.89 996.24 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
88. Rpl39-ps ENSMUSG00000036305 94.44 981.18 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
89. Ddx39b ENSMUSG00000019432 92.98 966.01 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
90. Gm14303 ENSMUSG00000081344 92.26 958.53 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
91. Rpl26 ENSMUSG00000060938 91.53 950.94 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
92. Rps9 ENSMUSG00000006333 90.80 943.36 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
93. Son ENSMUSG00000022961 86.44 898.06 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
94. Wbp5 86.44 898.06 WW domain binding protein 5
95. Gpc3 ENSMUSG00000055653 85.72 890.58 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
96. Cd24a ENSMUSG00000047139 84.27 875.52 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
97. Rpl8 ENSMUSG00000003970 84.27 875.52 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
98. Fkbp4 ENSMUSG00000030357 83.54 867.93 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
99. Serbp1 ENSMUSG00000036371 83.54 867.93 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
100. Sub1 ENSMUSG00000022205 82.81 860.35 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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