Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s37.

Sample reads: 96,234. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 5116.65 53168.97 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 3744.39 38909.31 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Nd1 ENSMUSG00000064341 2827.52 29381.79 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Co2 ENSMUSG00000064354 2768.82 28771.81 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 2760.05 28680.68 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. Ptma ENSMUSG00000026238 2683.81 27888.44 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Co1 ENSMUSG00000064351 1482.24 15402.49 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 1117.24 11609.65 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd3 ENSMUSG00000064360 1088.23 11308.19 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. H19 ENSMUSG00000000031 975.56 10137.40 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. Actb ENSMUSG00000029580 972.87 10109.44 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Co3 ENSMUSG00000064358 668.59 6947.56 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Eef1a1 ENSMUSG00000037742 615.29 6393.70 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Igf2 ENSMUSG00000048583 551.88 5734.79 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. mt-Rnr2 ENSMUSG00000064339 547.83 5692.70 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. Hmga2 ENSMUSG00000056758 520.84 5412.24 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. Mdk ENSMUSG00000027239 468.22 4865.44 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Gm13340 ENSMUSG00000083563 447.98 4655.12 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. mt-Nd5 ENSMUSG00000064367 404.12 4199.36 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Rpsa ENSMUSG00000032518 364.32 3785.78 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Npm1 ENSMUSG00000057113 309.00 3210.93 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tubb5 ENSMUSG00000001525 304.95 3168.85 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Tuba1b ENSMUSG00000023004 289.43 3007.57 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Pkm ENSMUSG00000032294 286.06 2972.55 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
25. Rps26 ENSMUSG00000025362 246.25 2558.87 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
26. Rpl4 ENSMUSG00000032399 242.20 2516.79 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
27. Cfl1 ENSMUSG00000056201 235.46 2446.75 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Pbx1 ENSMUSG00000052534 215.22 2236.43 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
29. Ubb ENSMUSG00000019505 201.05 2089.18 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Rps20 ENSMUSG00000028234 199.03 2068.19 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
31. Rpl18a ENSMUSG00000045128 196.33 2040.14 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
32. Eif4g2 ENSMUSG00000005610 195.65 2033.07 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Rpl23 ENSMUSG00000071415 193.63 2012.08 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
34. Hnrnpc ENSMUSG00000060373 184.86 1920.95 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
35. Ywhab ENSMUSG00000018326 172.71 1794.69 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
36. mt-Rnr1 ENSMUSG00000064337 169.34 1759.67 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
37. Nedd4 ENSMUSG00000032216 165.97 1724.65 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
38. Eif5a ENSMUSG00000078812 155.17 1612.43 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
39. Rps5 ENSMUSG00000012848 154.50 1605.47 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
40. Tpt1 ENSMUSG00000060126 153.15 1591.44 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
41. Grb10 ENSMUSG00000020176 151.80 1577.41 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
42. Meg3 ENSMUSG00000021268 151.12 1570.34 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
43. Chchd2 ENSMUSG00000070493 146.40 1521.30 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Atp5g3 ENSMUSG00000018770 143.70 1493.24 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Set ENSMUSG00000054766 143.70 1493.24 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
46. Rpl37 ENSMUSG00000041841 141.68 1472.25 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
47. Rps4x ENSMUSG00000031320 139.66 1451.26 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
48. Eef1b2 ENSMUSG00000025967 134.93 1402.11 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Hbb-y ENSMUSG00000052187 134.93 1402.11 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
50. Cox8a ENSMUSG00000035885 133.58 1388.08 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
51. Rplp1 ENSMUSG00000007892 132.91 1381.12 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
52. U2af2 ENSMUSG00000030435 132.23 1374.05 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
53. Ran ENSMUSG00000029430 131.56 1367.09 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
54. Hsp90ab1 ENSMUSG00000023944 129.54 1346.10 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
55. Paics ENSMUSG00000029247 128.86 1339.03 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
56. Trim28 ENSMUSG00000005566 128.19 1332.07 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
57. Myl6 ENSMUSG00000090841 126.16 1310.97 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
58. Hsp90aa1 ENSMUSG00000021270 125.49 1304.01 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Rpl39-ps ENSMUSG00000036305 123.46 1282.92 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
60. Rpl41 ENSMUSG00000093674 122.79 1275.96 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
61. Rps3a1 ENSMUSG00000028081 121.44 1261.93 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
62. Rpl32 ENSMUSG00000057841 120.76 1254.86 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
63. Banf1 ENSMUSG00000024844 113.34 1177.76 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
64. Gm5805 ENSMUSG00000061848 112.67 1170.79 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
65. Peg3 ENSMUSG00000002265 110.64 1149.70 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
66. Ybx1 ENSMUSG00000028639 110.64 1149.70 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
67. Pabpc1 ENSMUSG00000022283 108.62 1128.71 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
68. Hnrnpa2b1 ENSMUSG00000004980 107.27 1114.68 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
69. Cdk4 ENSMUSG00000006728 106.60 1107.72 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
70. Fkbp1a ENSMUSG00000032966 106.60 1107.72 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
71. Ldha ENSMUSG00000063229 105.92 1100.65 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
72. Ndufa12 ENSMUSG00000020022 105.92 1100.65 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
73. Cdkn1c ENSMUSG00000037664 105.25 1093.69 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
74. Ago2 ENSMUSG00000036698 102.55 1065.63 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
75. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 101.20 1051.61 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
76. Gm14586 ENSMUSG00000083621 101.20 1051.61 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
77. Gm14303 ENSMUSG00000081344 99.85 1037.58 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
78. Gm2000 ENSMUSG00000078193 98.50 1023.55 predicted gene 2000 [Source:MGI Symbol;Acc:MGI:3780170]
79. Gm15459 ENSMUSG00000100801 96.48 1002.56 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
80. Rrm2 ENSMUSG00000020649 95.80 995.49 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
81. Tecr ENSMUSG00000031708 95.80 995.49 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
82. Ddx39b ENSMUSG00000019432 94.45 981.46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
83. Anp32b ENSMUSG00000028333 93.78 974.50 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
84. Gm10800 ENSMUSG00000075014 93.78 974.50 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
85. Hmgn1 ENSMUSG00000040681 92.43 960.47 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
86. Rpl13a ENSMUSG00000074129 90.41 939.48 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
87. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 89.73 932.42 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
88. Rpl26 ENSMUSG00000060938 89.06 925.45 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
89. Rps8 ENSMUSG00000047675 88.38 918.39 ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
90. Ddx5 ENSMUSG00000020719 87.03 904.36 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
91. Wbp5 86.36 897.40 WW domain binding protein 5
92. Flrt3 ENSMUSG00000051379 84.33 876.30 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
93. Son ENSMUSG00000022961 82.98 862.28 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
94. Srsf3 ENSMUSG00000071172 82.31 855.31 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
95. Gpc3 ENSMUSG00000055653 81.63 848.25 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
96. 2810417H13Rik 80.96 841.28 RIKEN cDNA 2810417H13 gene
97. Sub1 ENSMUSG00000022205 80.96 841.28 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
98. Tmsb4x ENSMUSG00000049775 80.96 841.28 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
99. Tpm4 ENSMUSG00000031799 80.29 834.32 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
100. Ywhaz ENSMUSG00000022285 80.29 834.32 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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