Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s36.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4416.95 45895.01 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3209.70 33350.89 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2997.52 31146.20 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2583.10 26840.10 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2474.65 25713.24 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2403.13 24970.10 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1317.60 13690.73 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 1179.78 12258.69 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. H19 ENSMUSG00000000031 1136.68 11810.85 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Actb ENSMUSG00000029580 879.03 9133.70 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. Mdk ENSMUSG00000027239 815.57 8474.31 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. mt-Rnr2 ENSMUSG00000064339 812.25 8439.81 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
13. mt-Nd3 ENSMUSG00000064360 669.69 6958.52 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Hmga2 ENSMUSG00000056758 623.75 6481.17 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
15. Eef1a1 ENSMUSG00000037742 606.70 6304.01 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 595.34 6185.97 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. mt-Nd5 ENSMUSG00000064367 483.09 5019.62 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. Gm13340 ENSMUSG00000083563 459.88 4778.45 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Rpsa ENSMUSG00000032518 368.00 3823.76 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. mt-Co3 ENSMUSG00000064358 361.84 3759.75 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
21. Cfl1 ENSMUSG00000056201 345.74 3592.47 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Pkm ENSMUSG00000032294 285.59 2967.47 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. Npm1 ENSMUSG00000057113 243.91 2534.38 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Tubb5 ENSMUSG00000001525 238.70 2480.25 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Tuba1b ENSMUSG00000023004 236.33 2455.62 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. mt-Rnr1 ENSMUSG00000064337 216.92 2253.94 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
27. Hsp90ab1 ENSMUSG00000023944 216.44 2248.95 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
28. Rpl18a ENSMUSG00000045128 215.50 2239.19 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
29. Pbx1 ENSMUSG00000052534 206.97 2150.55 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
30. Set ENSMUSG00000054766 189.45 1968.51 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
31. Rpl4 ENSMUSG00000032399 185.18 1924.14 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Nedd4 ENSMUSG00000032216 181.87 1889.75 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. Rps26 ENSMUSG00000025362 178.55 1855.25 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
34. Eif4g2 ENSMUSG00000005610 177.13 1840.50 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Hnrnpc ENSMUSG00000060373 176.19 1830.73 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
36. Eif5a ENSMUSG00000078812 175.71 1825.74 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
37. Tpt1 ENSMUSG00000060126 171.45 1781.48 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Ywhab ENSMUSG00000018326 167.19 1737.21 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
39. Chchd2 ENSMUSG00000070493 163.40 1697.83 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Ubb ENSMUSG00000019505 161.98 1683.08 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
41. Atp5g3 ENSMUSG00000018770 159.14 1653.57 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
42. Rps20 ENSMUSG00000028234 159.14 1653.57 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
43. Banf1 ENSMUSG00000024844 153.93 1599.43 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
44. Rpl23 ENSMUSG00000071415 147.77 1535.43 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
45. Trim28 ENSMUSG00000005566 144.45 1500.93 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
46. Rps3a1 ENSMUSG00000028081 143.98 1496.05 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
47. Myl6 ENSMUSG00000090841 141.14 1466.54 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
48. Rplp1 ENSMUSG00000007892 136.40 1417.29 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
49. Eef1b2 ENSMUSG00000025967 135.93 1412.40 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
50. Ybx1 ENSMUSG00000028639 135.93 1412.40 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
51. Rrm2 ENSMUSG00000020649 134.98 1402.53 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
52. U2af2 ENSMUSG00000030435 134.03 1392.66 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
53. Ndufa12 ENSMUSG00000020022 132.14 1373.02 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
54. Grb10 ENSMUSG00000020176 131.67 1368.14 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
55. Cdkn1c ENSMUSG00000037664 129.30 1343.51 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
56. Fkbp1a ENSMUSG00000032966 126.46 1314.00 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Peg3 ENSMUSG00000002265 125.51 1304.13 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
58. Rpl37 ENSMUSG00000041841 125.51 1304.13 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
59. Ago2 ENSMUSG00000036698 125.03 1299.14 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
60. Cox8a ENSMUSG00000035885 122.19 1269.63 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
61. Hsp90aa1 ENSMUSG00000021270 122.19 1269.63 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
62. Pabpc1 ENSMUSG00000022283 119.82 1245.01 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
63. Meg3 ENSMUSG00000021268 116.04 1205.73 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
64. Paics ENSMUSG00000029247 116.04 1205.73 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
65. Cdk4 ENSMUSG00000006728 113.67 1181.11 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
66. Rps5 ENSMUSG00000012848 112.72 1171.23 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
67. Ran ENSMUSG00000029430 110.35 1146.61 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
68. Rps4x ENSMUSG00000031320 105.14 1092.47 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Tecr ENSMUSG00000031708 105.14 1092.47 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
70. Ddx39b ENSMUSG00000019432 104.67 1087.59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
71. Hmgn1 ENSMUSG00000040681 103.72 1077.72 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
72. 2810417H13Rik 102.77 1067.85 RIKEN cDNA 2810417H13 gene
73. Gm5805 ENSMUSG00000061848 102.30 1062.96 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
74. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 102.30 1062.96 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
75. Ldha ENSMUSG00000063229 101.83 1058.08 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
76. Crabp1 ENSMUSG00000032291 99.93 1038.34 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
77. Son ENSMUSG00000022961 97.57 1013.82 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
78. Rpl26 ENSMUSG00000060938 92.83 964.56 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
79. Pcbp1 ENSMUSG00000051695 91.41 949.81 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
80. Hbb-y ENSMUSG00000052187 90.93 944.82 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
81. Anp32b ENSMUSG00000028333 89.51 930.07 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
82. Rps9 ENSMUSG00000006333 89.51 930.07 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
83. Gm14303 ENSMUSG00000081344 89.04 925.18 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
84. Rpl32 ENSMUSG00000057841 89.04 925.18 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
85. Tmsb4x ENSMUSG00000049775 88.57 920.30 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
86. Ywhae ENSMUSG00000020849 88.09 915.31 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
87. Rpl8 ENSMUSG00000003970 87.62 910.43 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
88. Gm14586 ENSMUSG00000083621 85.25 885.80 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Ngfrap1 83.36 866.17 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
90. Gpc3 ENSMUSG00000055653 82.41 856.29 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
91. Lamp1 ENSMUSG00000031447 82.41 856.29 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
92. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 81.94 851.41 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
93. Ddx5 ENSMUSG00000020719 80.51 836.55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
94. Srsf3 ENSMUSG00000071172 80.04 831.67 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
95. Malat1 ENSMUSG00000092341 77.20 802.16 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
96. Wbp5 77.20 802.16 WW domain binding protein 5
97. Eef2 ENSMUSG00000034994 76.73 797.27 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
98. Tsc22d1 ENSMUSG00000022010 76.73 797.27 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
99. Caprin1 ENSMUSG00000027184 76.25 792.29 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
100. Fscn1 ENSMUSG00000029581 76.25 792.29 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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