Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s35.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4398.21 45696.12 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 3046.70 31654.33 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2824.53 29346.04 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd1 ENSMUSG00000064341 2252.91 23407.08 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2220.51 23070.45 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2185.80 22709.83 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Rnr2 ENSMUSG00000064339 1401.27 14558.79 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Nd2 ENSMUSG00000064345 1238.12 12863.71 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1206.88 12539.13 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. H19 ENSMUSG00000000031 894.45 9293.07 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. Actb ENSMUSG00000029580 825.03 8571.82 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Mdk ENSMUSG00000027239 781.06 8114.99 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Nd3 ENSMUSG00000064360 774.11 8042.78 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Hmga2 ENSMUSG00000056758 616.74 6407.75 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
15. mt-Co3 ENSMUSG00000064358 610.96 6347.70 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Eef1a1 ENSMUSG00000037742 554.26 5758.60 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Nd5 ENSMUSG00000064367 516.08 5361.92 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. Igf2 ENSMUSG00000048583 507.98 5277.76 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Gm13340 ENSMUSG00000083563 396.89 4123.57 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Rpsa ENSMUSG00000032518 374.91 3895.21 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Pkm ENSMUSG00000032294 321.68 3342.16 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
22. Tuba1b ENSMUSG00000023004 291.59 3029.54 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Npm1 ENSMUSG00000057113 280.02 2909.33 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Cfl1 ENSMUSG00000056201 256.88 2668.91 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Tubb5 ENSMUSG00000001525 245.31 2548.70 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. mt-Rnr1 ENSMUSG00000064337 245.31 2548.70 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
27. Pbx1 ENSMUSG00000052534 227.95 2368.33 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
28. Set ENSMUSG00000054766 226.80 2356.39 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
29. Rpl4 ENSMUSG00000032399 197.87 2055.81 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Nedd4 ENSMUSG00000032216 189.77 1971.66 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Eif4g2 ENSMUSG00000005610 188.61 1959.60 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Hsp90ab1 ENSMUSG00000023944 178.20 1851.45 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Rpl18a ENSMUSG00000045128 175.88 1827.34 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
34. Chchd2 ENSMUSG00000070493 174.73 1815.39 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Tpt1 ENSMUSG00000060126 166.63 1731.24 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
36. Ubb ENSMUSG00000019505 165.47 1719.19 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
37. Rpl23 ENSMUSG00000071415 164.31 1707.13 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
38. Hbb-y ENSMUSG00000052187 160.84 1671.08 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
39. Rpl37 ENSMUSG00000041841 159.68 1659.03 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
40. Rps20 ENSMUSG00000028234 157.37 1635.03 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Ybx1 ENSMUSG00000028639 155.05 1610.92 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
42. Hnrnpc ENSMUSG00000060373 151.58 1574.87 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Meg3 ENSMUSG00000021268 150.43 1562.92 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
44. Eif5a ENSMUSG00000078812 148.11 1538.82 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
45. Rplp1 ENSMUSG00000007892 146.95 1526.77 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
46. Rps26 ENSMUSG00000025362 146.95 1526.77 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
47. U2af2 ENSMUSG00000030435 142.33 1478.77 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
48. Myl6 ENSMUSG00000090841 138.85 1442.61 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
49. Ywhab ENSMUSG00000018326 137.70 1430.66 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Rpl32 ENSMUSG00000057841 134.23 1394.61 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
51. Cdkn1c ENSMUSG00000037664 130.75 1358.45 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
52. Ago2 ENSMUSG00000036698 124.97 1298.40 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
53. Peg3 ENSMUSG00000002265 124.97 1298.40 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
54. Hsp90aa1 ENSMUSG00000021270 122.65 1274.30 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
55. Banf1 ENSMUSG00000024844 121.50 1262.35 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
56. Trim28 ENSMUSG00000005566 120.34 1250.30 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
57. Eef1b2 ENSMUSG00000025967 118.03 1226.30 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
58. Ran ENSMUSG00000029430 116.87 1214.25 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
59. Gm10800 ENSMUSG00000075014 115.71 1202.19 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
60. Grb10 ENSMUSG00000020176 115.71 1202.19 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
61. Ldha ENSMUSG00000063229 115.71 1202.19 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
62. Atp5g3 ENSMUSG00000018770 114.55 1190.14 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
63. Ndufa12 ENSMUSG00000020022 113.40 1178.19 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
64. 2810417H13Rik 109.93 1142.14 RIKEN cDNA 2810417H13 gene
65. Cox8a ENSMUSG00000035885 109.93 1142.14 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
66. Gm5805 ENSMUSG00000061848 109.93 1142.14 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
67. Rps5 ENSMUSG00000012848 109.93 1142.14 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
68. Paics ENSMUSG00000029247 108.77 1130.09 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
69. Wbp5 108.77 1130.09 WW domain binding protein 5
70. Gm14303 ENSMUSG00000081344 107.61 1118.04 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
71. Pabpc1 ENSMUSG00000022283 107.61 1118.04 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
72. Son ENSMUSG00000022961 107.61 1118.04 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
73. Rpl41 ENSMUSG00000093674 106.46 1106.09 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
74. Rps3a1 ENSMUSG00000028081 106.46 1106.09 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
75. Tpm4 ENSMUSG00000031799 105.30 1094.04 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
76. Anp32b ENSMUSG00000028333 101.83 1057.98 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
77. Ngfrap1 101.83 1057.98 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
78. Pcbp1 ENSMUSG00000051695 100.67 1045.93 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
79. Malat1 ENSMUSG00000092341 94.88 985.78 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
80. Rpl26 ENSMUSG00000060938 93.73 973.83 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
81. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 93.73 973.83 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
82. Rps4x ENSMUSG00000031320 92.57 961.78 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
83. Fkbp4 ENSMUSG00000030357 90.26 937.78 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
84. Gm15459 ENSMUSG00000100801 89.10 925.72 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
85. Gm14586 ENSMUSG00000083621 87.94 913.67 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
86. Rpl8 ENSMUSG00000003970 87.94 913.67 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
87. Ddx39b ENSMUSG00000019432 86.78 901.62 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
88. Ccnd2 ENSMUSG00000000184 85.63 889.67 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
89. Ddx5 ENSMUSG00000020719 84.47 877.62 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
90. Arl6ip1 ENSMUSG00000030654 83.31 865.57 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
91. Srsf3 ENSMUSG00000071172 83.31 865.57 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
92. Erdr1 82.16 853.62 erythroid differentiation regulator 1, transcript variant 1, non-coding
93. Rrm2 ENSMUSG00000020649 82.16 853.62 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
94. Ywhaz ENSMUSG00000022285 82.16 853.62 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
95. Caprin1 ENSMUSG00000027184 81.00 841.57 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
96. Rpl39-ps ENSMUSG00000036305 79.84 829.51 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
97. Marcks ENSMUSG00000069662 78.68 817.46 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
98. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 77.53 805.51 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
99. Atxn7l3b ENSMUSG00000074748 77.53 805.51 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
100. Prdx1 ENSMUSG00000028691 77.53 805.51 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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