Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s32.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4193.34 43566.24 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3005.56 31225.93 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2798.50 29074.71 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2153.25 22370.95 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2106.70 21887.33 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1999.96 20778.36 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. H19 ENSMUSG00000000031 1389.22 14433.15 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1239.14 12873.91 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Rnr2 ENSMUSG00000064339 1023.25 10630.94 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. mt-Nd2 ENSMUSG00000064345 1002.39 10414.22 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Actb ENSMUSG00000029580 892.44 9271.91 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Igf2 ENSMUSG00000048583 755.20 7846.07 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Hmga2 ENSMUSG00000056758 724.71 7529.29 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
14. Mdk ENSMUSG00000027239 686.99 7137.41 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. mt-Nd3 ENSMUSG00000064360 686.18 7128.99 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. Eef1a1 ENSMUSG00000037742 612.35 6361.94 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Rnr1 ENSMUSG00000064337 403.68 4193.99 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
18. Gm13340 ENSMUSG00000083563 389.24 4043.97 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. mt-Nd5 ENSMUSG00000064367 378.80 3935.50 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Rpsa ENSMUSG00000032518 378.00 3927.19 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. mt-Co3 ENSMUSG00000064358 356.33 3702.05 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
22. Set ENSMUSG00000054766 311.39 3235.15 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
23. Cfl1 ENSMUSG00000056201 292.13 3035.05 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Pkm ENSMUSG00000032294 281.70 2926.69 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
25. Npm1 ENSMUSG00000057113 276.88 2876.61 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Tuba1b ENSMUSG00000023004 255.21 2651.48 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Hbb-y ENSMUSG00000052187 244.78 2543.11 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
28. Tubb5 ENSMUSG00000001525 231.94 2409.71 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Rps26 ENSMUSG00000025362 212.68 2209.62 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
30. Eif4g2 ENSMUSG00000005610 211.07 2192.89 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Hsp90ab1 ENSMUSG00000023944 207.06 2151.23 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Ybx1 ENSMUSG00000028639 196.63 2042.87 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
33. Hnrnpc ENSMUSG00000060373 193.42 2009.52 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
34. Ubb ENSMUSG00000019505 191.01 1984.48 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Pbx1 ENSMUSG00000052534 188.60 1959.44 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
36. Rpl4 ENSMUSG00000032399 184.59 1917.78 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Peg3 ENSMUSG00000002265 179.77 1867.70 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
38. Nedd4 ENSMUSG00000032216 178.17 1851.08 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
39. Chchd2 ENSMUSG00000070493 176.56 1834.35 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Grb10 ENSMUSG00000020176 173.35 1801.00 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
41. U2af2 ENSMUSG00000030435 169.34 1759.34 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
42. Ywhab ENSMUSG00000018326 166.93 1734.30 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
43. Cdkn1c ENSMUSG00000037664 162.92 1692.64 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
44. Rplp1 ENSMUSG00000007892 162.12 1684.33 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
45. Tpt1 ENSMUSG00000060126 159.71 1659.29 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
46. Eif5a ENSMUSG00000078812 155.70 1617.63 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Rpl18a ENSMUSG00000045128 154.09 1600.90 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
48. Hsp90aa1 ENSMUSG00000021270 150.88 1567.55 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Rps20 ENSMUSG00000028234 145.26 1509.16 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
50. Atp5g3 ENSMUSG00000018770 141.25 1467.50 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
51. Rpl23 ENSMUSG00000071415 134.83 1400.80 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
52. Banf1 ENSMUSG00000024844 134.03 1392.49 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
53. Pabpc1 ENSMUSG00000022283 131.62 1367.45 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
54. Ldha ENSMUSG00000063229 129.21 1342.41 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
55. Ago2 ENSMUSG00000036698 128.41 1334.10 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
56. Myl6 ENSMUSG00000090841 125.20 1300.75 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
57. Fkbp1a ENSMUSG00000032966 124.40 1292.44 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
58. Eef1b2 ENSMUSG00000025967 123.59 1284.02 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
59. Rrm2 ENSMUSG00000020649 121.99 1267.40 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
60. Meg3 ENSMUSG00000021268 121.19 1259.09 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
61. Gm5805 ENSMUSG00000061848 116.37 1209.01 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
62. Rps4x ENSMUSG00000031320 115.57 1200.70 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
63. Trim28 ENSMUSG00000005566 113.96 1183.97 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
64. Gm10800 ENSMUSG00000075014 113.16 1175.66 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
65. Cox8a ENSMUSG00000035885 112.36 1167.35 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
66. Hmgn1 ENSMUSG00000040681 112.36 1167.35 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
67. Malat1 ENSMUSG00000092341 112.36 1167.35 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
68. Rpl37 ENSMUSG00000041841 112.36 1167.35 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
69. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 109.95 1142.31 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
70. Gm14303 ENSMUSG00000081344 109.15 1134.00 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
71. Ran ENSMUSG00000029430 107.54 1117.27 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
72. Acta2 ENSMUSG00000035783 105.94 1100.65 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
73. Gm14586 ENSMUSG00000083621 103.53 1075.61 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
74. Rps3a1 ENSMUSG00000028081 101.92 1058.89 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
75. Tmsb4x ENSMUSG00000049775 101.92 1058.89 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
76. Hba-a1 ENSMUSG00000069919 98.71 1025.54 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
77. Mapre1 ENSMUSG00000027479 98.71 1025.54 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
78. 2810417H13Rik 97.91 1017.23 RIKEN cDNA 2810417H13 gene
79. Paics ENSMUSG00000029247 97.11 1008.91 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
80. Rps5 ENSMUSG00000012848 96.31 1000.60 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
81. Rpl39-ps ENSMUSG00000036305 95.50 992.19 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
82. Ndufa12 ENSMUSG00000020022 94.70 983.88 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
83. Rps9 ENSMUSG00000006333 94.70 983.88 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
84. Hba-x ENSMUSG00000055609 92.29 958.84 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
85. Son ENSMUSG00000022961 92.29 958.84 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
86. Pcbp1 ENSMUSG00000051695 91.49 950.53 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
87. Ywhae ENSMUSG00000020849 91.49 950.53 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
88. Ccnd2 ENSMUSG00000000184 89.08 925.49 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
89. Basp1 ENSMUSG00000045763 88.28 917.18 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
90. Marcks ENSMUSG00000069662 88.28 917.18 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
91. Rpl8 ENSMUSG00000003970 88.28 917.18 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
92. Hnrnpa0 ENSMUSG00000007836 87.48 908.86 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
93. Rpl26 ENSMUSG00000060938 87.48 908.86 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
94. Tecr ENSMUSG00000031708 87.48 908.86 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
95. Anp32b ENSMUSG00000028333 86.68 900.55 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
96. Sub1 ENSMUSG00000022205 86.68 900.55 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
97. Hnrnpa2b1 ENSMUSG00000004980 85.87 892.14 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
98. Kpnb1 ENSMUSG00000001440 85.87 892.14 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
99. Ywhaz ENSMUSG00000022285 85.87 892.14 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
100. Ddx5 ENSMUSG00000020719 85.07 883.83 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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