Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s31.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3990.31 41455.30 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2937.46 30517.25 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2672.19 27761.36 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Co2 ENSMUSG00000064354 2460.13 25558.27 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2308.01 23977.90 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 2155.89 22397.52 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. H19 ENSMUSG00000000031 1175.74 12214.75 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1154.00 11988.90 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1134.52 11786.52 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Actb ENSMUSG00000029580 966.67 10042.73 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd3 ENSMUSG00000064360 867.00 9007.26 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Rnr2 ENSMUSG00000064339 827.29 8594.71 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
13. Igf2 ENSMUSG00000048583 749.35 7784.99 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Mdk ENSMUSG00000027239 687.16 7138.90 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Eef1a1 ENSMUSG00000037742 560.52 5823.24 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Hmga2 ENSMUSG00000056758 519.30 5395.00 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. mt-Co3 ENSMUSG00000064358 483.33 5021.31 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Rpsa ENSMUSG00000032518 414.39 4305.09 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. mt-Nd5 ENSMUSG00000064367 389.66 4048.17 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Gm13340 ENSMUSG00000083563 385.92 4009.32 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Pkm ENSMUSG00000032294 319.97 3324.17 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
22. Cfl1 ENSMUSG00000056201 319.22 3316.37 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Hbb-y ENSMUSG00000052187 289.25 3005.02 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
24. Tuba1b ENSMUSG00000023004 289.25 3005.02 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Tubb5 ENSMUSG00000001525 279.51 2903.83 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Npm1 ENSMUSG00000057113 275.76 2864.87 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Set ENSMUSG00000054766 238.29 2475.59 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
28. Eif5a ENSMUSG00000078812 229.30 2382.20 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
29. Hsp90ab1 ENSMUSG00000023944 219.56 2281.01 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
30. mt-Rnr1 ENSMUSG00000064337 216.56 2249.84 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
31. Nedd4 ENSMUSG00000032216 202.33 2102.00 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Rpl4 ENSMUSG00000032399 200.83 2086.42 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Tpt1 ENSMUSG00000060126 195.58 2031.88 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Rps26 ENSMUSG00000025362 184.34 1915.11 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
35. Ubb ENSMUSG00000019505 179.10 1860.67 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
36. Pbx1 ENSMUSG00000052534 172.35 1790.54 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
37. Atp5g3 ENSMUSG00000018770 171.60 1782.75 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
38. Eif4g2 ENSMUSG00000005610 171.60 1782.75 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Grb10 ENSMUSG00000020176 170.85 1774.96 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
40. Cdkn1c ENSMUSG00000037664 170.10 1767.17 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
41. U2af2 ENSMUSG00000030435 170.10 1767.17 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
42. Ybx1 ENSMUSG00000028639 162.61 1689.35 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
43. Hnrnpc ENSMUSG00000060373 161.11 1673.77 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
44. Rps20 ENSMUSG00000028234 160.36 1665.98 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. Eef1b2 ENSMUSG00000025967 157.36 1634.81 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Rpl18a ENSMUSG00000045128 152.12 1580.37 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
47. Ywhab ENSMUSG00000018326 151.37 1572.58 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
48. Chchd2 ENSMUSG00000070493 149.87 1557.00 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
49. Rpl23 ENSMUSG00000071415 141.63 1471.39 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
50. Rplp1 ENSMUSG00000007892 140.88 1463.60 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
51. Peg3 ENSMUSG00000002265 140.13 1455.81 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
52. Fscn1 ENSMUSG00000029581 137.88 1432.43 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
53. Acta2 ENSMUSG00000035783 137.13 1424.64 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
54. Hba-x ENSMUSG00000055609 134.88 1401.27 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
55. Cox8a ENSMUSG00000035885 133.38 1385.68 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
56. Pabpc1 ENSMUSG00000022283 132.64 1378.00 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
57. Gm10800 ENSMUSG00000075014 131.14 1362.41 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
58. Hsp90aa1 ENSMUSG00000021270 128.14 1331.25 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Myl6 ENSMUSG00000090841 125.14 1300.08 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
60. Rpl37 ENSMUSG00000041841 125.14 1300.08 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
61. Rpl32 ENSMUSG00000057841 124.39 1292.29 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
62. Ran ENSMUSG00000029430 121.40 1261.22 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
63. Rps5 ENSMUSG00000012848 119.90 1245.64 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
64. Pcbp1 ENSMUSG00000051695 119.15 1237.85 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
65. Ndufa12 ENSMUSG00000020022 117.65 1222.26 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
66. Trim28 ENSMUSG00000005566 116.90 1214.47 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
67. Paics ENSMUSG00000029247 116.15 1206.68 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
68. Rrm2 ENSMUSG00000020649 116.15 1206.68 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
69. 2810417H13Rik 115.40 1198.89 RIKEN cDNA 2810417H13 gene
70. Ldha ENSMUSG00000063229 115.40 1198.89 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
71. Fkbp1a ENSMUSG00000032966 114.65 1191.10 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
72. Hba-a1 ENSMUSG00000069919 114.65 1191.10 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
73. Hmgn1 ENSMUSG00000040681 113.15 1175.51 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
74. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 113.15 1175.51 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
75. Gm14303 ENSMUSG00000081344 110.90 1152.14 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
76. Hnrnpa0 ENSMUSG00000007836 108.66 1128.87 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
77. Rps3a1 ENSMUSG00000028081 108.66 1128.87 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
78. Banf1 ENSMUSG00000024844 107.91 1121.08 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
79. Ddx39b ENSMUSG00000019432 107.16 1113.28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
80. Meg3 ENSMUSG00000021268 104.91 1089.91 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
81. Ago2 ENSMUSG00000036698 103.41 1074.33 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
82. Rps4x ENSMUSG00000031320 103.41 1074.33 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
83. Gm15459 ENSMUSG00000100801 99.66 1035.37 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
84. Gm5805 ENSMUSG00000061848 96.67 1004.30 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
85. Son ENSMUSG00000022961 95.17 988.72 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
86. Hbb-bh1 ENSMUSG00000052217 93.67 973.14 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
87. Tmsb4x ENSMUSG00000049775 92.92 965.35 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
88. Cdk4 ENSMUSG00000006728 90.67 941.97 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
89. Rpl39-ps ENSMUSG00000036305 89.92 934.18 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
90. Rpl8 ENSMUSG00000003970 89.92 934.18 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
91. Sub1 ENSMUSG00000022205 89.92 934.18 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
92. Anp32b ENSMUSG00000028333 89.17 926.39 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
93. Hoxc8 ENSMUSG00000001657 86.92 903.01 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
94. Tecr ENSMUSG00000031708 86.92 903.01 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
95. Fkbp4 ENSMUSG00000030357 86.18 895.32 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
96. Ywhae ENSMUSG00000020849 84.68 879.74 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
97. Tuba1a ENSMUSG00000072235 83.93 871.95 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
98. Caprin1 ENSMUSG00000027184 82.43 856.36 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
99. Col3a1 ENSMUSG00000026043 81.68 848.57 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
100. Hnrnpa2b1 ENSMUSG00000004980 81.68 848.57 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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