Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E10_5_slice_2, section s3.

Sample reads: 96,258. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 5143.47 53433.96 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2213.13 22991.54 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2000.98 20787.58 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1493.50 15515.52 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1386.22 14401.02 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1315.10 13662.18 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Rnr2 ENSMUSG00000064339 923.34 9592.30 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 867.89 9016.25 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Actb ENSMUSG00000029580 699.14 7263.16 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. Eef1a1 ENSMUSG00000037742 613.55 6373.99 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. mt-Nd2 ENSMUSG00000064345 478.55 4971.51 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. Pkm ENSMUSG00000032294 459.26 4771.11 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
13. Tuba1b ENSMUSG00000023004 455.64 4733.51 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
14. Rpsa ENSMUSG00000032518 439.97 4570.72 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Hbb-y ENSMUSG00000052187 411.04 4270.17 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. mt-Nd3 ENSMUSG00000064360 386.94 4019.80 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
17. Mdk ENSMUSG00000027239 321.84 3343.50 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Cfl1 ENSMUSG00000056201 313.41 3255.92 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
19. Gm13340 ENSMUSG00000083563 300.15 3118.17 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. mt-Co3 ENSMUSG00000064358 298.94 3105.60 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
21. Npm1 ENSMUSG00000057113 283.27 2942.81 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tubb5 ENSMUSG00000001525 277.24 2880.16 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Set ENSMUSG00000054766 272.42 2830.09 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
24. Hsp90ab1 ENSMUSG00000023944 263.98 2742.41 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
25. Rpl4 ENSMUSG00000032399 262.78 2729.94 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
26. Rrm2 ENSMUSG00000020649 262.78 2729.94 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
27. Tmsb4x ENSMUSG00000049775 262.78 2729.94 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
28. Tubb2b ENSMUSG00000045136 260.37 2704.91 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
29. Atp5g3 ENSMUSG00000018770 257.96 2679.87 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
30. U2af2 ENSMUSG00000030435 248.31 2579.62 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
31. Eif4g2 ENSMUSG00000005610 241.08 2504.51 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Hnrnpc ENSMUSG00000060373 235.05 2441.86 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
33. H19 ENSMUSG00000000031 232.64 2416.83 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
34. Banf1 ENSMUSG00000024844 230.23 2391.79 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
35. Ndufa12 ENSMUSG00000020022 229.03 2379.32 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
36. Nedd4 ENSMUSG00000032216 218.18 2266.61 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
37. mt-Nd5 ENSMUSG00000064367 216.97 2254.04 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
38. Tpt1 ENSMUSG00000060126 213.36 2216.53 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Ybx1 ENSMUSG00000028639 213.36 2216.53 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
40. Chchd2 ENSMUSG00000070493 204.92 2128.85 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Rpl18a ENSMUSG00000045128 204.92 2128.85 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
42. Ldha ENSMUSG00000063229 202.51 2103.82 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
43. Ubb ENSMUSG00000019505 202.51 2103.82 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
44. Gm14303 ENSMUSG00000081344 201.30 2091.25 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
45. Rps26 ENSMUSG00000025362 195.28 2028.71 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Hbb-bh1 ENSMUSG00000052217 194.07 2016.13 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
47. Ran ENSMUSG00000029430 186.84 1941.02 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
48. Eif5a ENSMUSG00000078812 182.02 1890.95 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
49. Ndufc2 ENSMUSG00000030647 179.61 1865.91 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
50. Rps5 ENSMUSG00000012848 178.40 1853.34 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
51. Ccnd2 ENSMUSG00000000184 175.99 1828.31 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
52. Rplp1 ENSMUSG00000007892 175.99 1828.31 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
53. Eef1b2 ENSMUSG00000025967 174.78 1815.74 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
54. Trim28 ENSMUSG00000005566 173.58 1803.27 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
55. Crabp1 ENSMUSG00000032291 162.73 1690.55 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
56. mt-Rnr1 ENSMUSG00000064337 161.52 1677.98 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
57. Rps20 ENSMUSG00000028234 160.32 1665.52 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
58. Gm26917 ENSMUSG00000097971 159.11 1652.95 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
59. 2810417H13Rik 157.91 1640.48 RIKEN cDNA 2810417H13 gene
60. Grb10 ENSMUSG00000020176 157.91 1640.48 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
61. Trp53i11 ENSMUSG00000068735 157.91 1640.48 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
62. Ywhab ENSMUSG00000018326 153.09 1590.41 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
63. Hba-x ENSMUSG00000055609 151.88 1577.84 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
64. Hsp90aa1 ENSMUSG00000021270 151.88 1577.84 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
65. Rps3a1 ENSMUSG00000028081 151.88 1577.84 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
66. Paics ENSMUSG00000029247 147.06 1527.76 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
67. Hmga2 ENSMUSG00000056758 145.85 1515.19 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
68. Pcbp1 ENSMUSG00000051695 143.44 1490.16 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
69. Rpl41 ENSMUSG00000093674 143.44 1490.16 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
70. Rpl23 ENSMUSG00000071415 142.24 1477.69 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
71. Fkbp1a ENSMUSG00000032966 136.21 1415.04 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
72. Tecr ENSMUSG00000031708 133.80 1390.01 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
73. Anp32b ENSMUSG00000028333 131.39 1364.97 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
74. Pabpc1 ENSMUSG00000022283 131.39 1364.97 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 130.18 1352.40 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
76. Ywhae ENSMUSG00000020849 128.98 1339.93 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
77. Rpl39-ps ENSMUSG00000036305 127.77 1327.36 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
78. Lamp1 ENSMUSG00000031447 124.16 1289.86 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
79. Sf3b4 ENSMUSG00000068856 121.75 1264.82 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
80. Hba-a1 ENSMUSG00000069919 118.13 1227.22 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
81. Serbp1 ENSMUSG00000036371 118.13 1227.22 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
82. Tuba1a ENSMUSG00000072235 118.13 1227.22 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
83. Rpl37 ENSMUSG00000041841 116.92 1214.65 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
84. Rpl32 ENSMUSG00000057841 114.51 1189.61 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
85. Rpl26 ENSMUSG00000060938 113.31 1177.14 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
86. Msi1 ENSMUSG00000054256 112.10 1164.57 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
87. Gm5805 ENSMUSG00000061848 110.90 1152.11 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
88. Sox2 ENSMUSG00000074637 110.90 1152.11 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
89. Rps4x ENSMUSG00000031320 108.49 1127.07 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
90. Jund ENSMUSG00000071076, ENSMUSG00000110974 107.28 1114.50 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
91. Igf2 ENSMUSG00000048583 106.08 1102.03 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
92. Ddx39b ENSMUSG00000019432 102.46 1064.43 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
93. Hnrnpa0 ENSMUSG00000007836 102.46 1064.43 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
94. Gm9846 Gm9846 101.25 1051.86
95. Scd2 ENSMUSG00000025203 101.25 1051.86 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
96. Hmgn1 ENSMUSG00000040681 100.05 1039.39 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
97. Rps9 ENSMUSG00000006333 100.05 1039.39 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
98. Sub1 ENSMUSG00000022205 100.05 1039.39 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
99. Tmpo ENSMUSG00000019961 100.05 1039.39 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
100. Map1b ENSMUSG00000052727 98.84 1026.82 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA