Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s29.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3913.42 40655.90 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2859.02 29701.90 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2747.69 28545.31 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd1 ENSMUSG00000064341 2199.02 22845.27 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2071.68 21522.35 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1892.67 19662.65 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. H19 ENSMUSG00000000031 1300.35 13509.13 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1205.02 12518.76 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1017.28 10568.36 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Rnr2 ENSMUSG00000064339 994.73 10334.09 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. Actb ENSMUSG00000029580 886.30 9207.63 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Igf2 ENSMUSG00000048583 823.72 8557.50 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. mt-Nd3 ENSMUSG00000064360 727.67 7559.65 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Mdk ENSMUSG00000027239 539.93 5609.25 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Eef1a1 ENSMUSG00000037742 530.47 5510.97 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Hmga2 ENSMUSG00000056758 493.36 5125.44 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. mt-Co3 ENSMUSG00000064358 487.54 5064.98 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. mt-Nd5 ENSMUSG00000064367 429.33 4460.24 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Rpsa ENSMUSG00000032518 403.13 4188.05 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Gm13340 ENSMUSG00000083563 359.47 3734.48 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Cfl1 ENSMUSG00000056201 338.37 3515.27 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Pkm ENSMUSG00000032294 336.18 3492.52 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. Npm1 ENSMUSG00000057113 297.62 3091.93 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Tuba1b ENSMUSG00000023004 288.89 3001.23 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Set ENSMUSG00000054766 266.33 2766.86 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
26. Tubb5 ENSMUSG00000001525 266.33 2766.86 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. mt-Rnr1 ENSMUSG00000064337 232.13 2411.56 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
28. Hsp90ab1 ENSMUSG00000023944 216.85 2252.82 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Rps26 ENSMUSG00000025362 208.11 2162.02 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
30. Hnrnpc ENSMUSG00000060373 193.56 2010.86 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
31. Ubb ENSMUSG00000019505 191.38 1988.22 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Rpl4 ENSMUSG00000032399 189.92 1973.05 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. U2af2 ENSMUSG00000030435 189.19 1965.46 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
34. Tpt1 ENSMUSG00000060126 185.56 1927.75 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Ybx1 ENSMUSG00000028639 183.37 1905.00 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
36. Eif5a ENSMUSG00000078812 181.19 1882.35 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
37. Gm10800 ENSMUSG00000075014 174.64 1814.31 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
38. Peg3 ENSMUSG00000002265 169.55 1761.43 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
39. Eif4g2 ENSMUSG00000005610 168.82 1753.84 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
40. Nedd4 ENSMUSG00000032216 168.82 1753.84 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
41. Rps20 ENSMUSG00000028234 164.45 1708.44 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
42. Atp5g3 ENSMUSG00000018770 163.73 1700.96 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
43. Rpl18a ENSMUSG00000045128 157.90 1640.40 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
44. Pbx1 ENSMUSG00000052534 154.27 1602.69 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
45. Pabpc1 ENSMUSG00000022283 153.54 1595.10 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
46. Eef1b2 ENSMUSG00000025967 152.81 1587.52 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Rpl23 ENSMUSG00000071415 152.81 1587.52 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Ywhab ENSMUSG00000018326 146.99 1527.06 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
49. Chchd2 ENSMUSG00000070493 145.53 1511.89 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
50. Gm5805 ENSMUSG00000061848 143.35 1489.24 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
51. Hsp90aa1 ENSMUSG00000021270 143.35 1489.24 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Rpl37 ENSMUSG00000041841 141.17 1466.59 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
53. Rplp1 ENSMUSG00000007892 139.71 1451.42 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
54. Ndufa12 ENSMUSG00000020022 138.26 1436.36 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
55. Rps4x ENSMUSG00000031320 136.07 1413.61 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Ago2 ENSMUSG00000036698 130.25 1353.15 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
57. Cox8a ENSMUSG00000035885 128.80 1338.08 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
58. Grb10 ENSMUSG00000020176 128.07 1330.50 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
59. Fkbp1a ENSMUSG00000032966 127.34 1322.91 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
60. Trim28 ENSMUSG00000005566 127.34 1322.91 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
61. Ldha ENSMUSG00000063229 120.07 1247.39 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
62. Paics ENSMUSG00000029247 120.07 1247.39 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
63. Banf1 ENSMUSG00000024844 118.61 1232.22 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
64. Cdkn1c ENSMUSG00000037664 117.88 1224.64 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
65. Ran ENSMUSG00000029430 117.88 1224.64 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
66. Pcbp1 ENSMUSG00000051695 114.97 1194.41 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
67. Acta2 ENSMUSG00000035783 114.24 1186.82 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
68. Rpl41 ENSMUSG00000093674 114.24 1186.82 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
69. Ccnd2 ENSMUSG00000000184 112.79 1171.76 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
70. Tecr ENSMUSG00000031708 112.06 1164.17 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
71. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 108.42 1126.36 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
72. Son ENSMUSG00000022961 107.70 1118.88 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
73. Fscn1 ENSMUSG00000029581 106.97 1111.29 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
74. Myl6 ENSMUSG00000090841 105.51 1096.13 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
75. 2810417H13Rik 103.33 1073.48 RIKEN cDNA 2810417H13 gene
76. Rps3a1 ENSMUSG00000028081 102.60 1065.90 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
77. Lamp1 ENSMUSG00000031447 101.15 1050.83 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
78. Ywhae ENSMUSG00000020849 101.15 1050.83 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
79. Anp32b ENSMUSG00000028333 100.42 1043.25 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
80. Hbb-y ENSMUSG00000052187 100.42 1043.25 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
81. Meg3 ENSMUSG00000021268 100.42 1043.25 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
82. Rrm2 ENSMUSG00000020649 100.42 1043.25 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
83. Rpl32 ENSMUSG00000057841 98.24 1020.60 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
84. Eef2 ENSMUSG00000034994 97.51 1013.02 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
85. Hmgn1 ENSMUSG00000040681 96.78 1005.43 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
86. Rps5 ENSMUSG00000012848 96.05 997.85 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
87. Gm14303 ENSMUSG00000081344 93.87 975.20 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
88. Hnrnpa0 ENSMUSG00000007836 93.87 975.20 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
89. Cdk4 ENSMUSG00000006728 91.69 952.55 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
90. Rpl26 ENSMUSG00000060938 90.23 937.39 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
91. Mapre1 ENSMUSG00000027479 88.78 922.32 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
92. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 88.78 922.32 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
93. Tpm4 ENSMUSG00000031799 88.05 914.74 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
94. Gm14586 ENSMUSG00000083621 86.59 899.57 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
95. Marcksl1 ENSMUSG00000047945 85.87 892.09 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
96. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 84.41 876.92 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
97. Fkbp4 ENSMUSG00000030357 82.95 861.75 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
98. Scd2 ENSMUSG00000025203 82.95 861.75 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
99. Malat1 ENSMUSG00000092341 82.23 854.27 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
100. Serbp1 ENSMUSG00000036371 82.23 854.27 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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