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Experiment Mouse_E10_5_slice_2, section s28.

Sample reads: 96,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4357.87 45273.99 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3527.37 36645.91 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2648.86 27519.06 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2128.69 22115.00 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2120.56 22030.54 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1934.37 20096.21 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. H19 ENSMUSG00000000031 1380.21 14339.03 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1228.01 12757.82 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1004.13 10431.93 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Rnr2 ENSMUSG00000064339 812.02 8436.09 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. Actb ENSMUSG00000029580 782.47 8129.10 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Igf2 ENSMUSG00000048583 763.99 7937.11 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Mdk ENSMUSG00000027239 703.41 7307.74 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Nd3 ENSMUSG00000064360 579.28 6018.15 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Eef1a1 ENSMUSG00000037742 551.94 5734.12 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Hmga2 ENSMUSG00000056758 438.89 4559.64 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. mt-Rnr1 ENSMUSG00000064337 417.46 4337.00 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
18. mt-Nd5 ENSMUSG00000064367 406.38 4221.89 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Rpsa ENSMUSG00000032518 401.21 4168.18 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Gm13340 ENSMUSG00000083563 387.17 4022.32 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. mt-Co3 ENSMUSG00000064358 364.26 3784.30 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
22. Pkm ENSMUSG00000032294 356.88 3707.63 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. Cfl1 ENSMUSG00000056201 280.03 2909.24 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Npm1 ENSMUSG00000057113 274.86 2855.53 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Hsp90ab1 ENSMUSG00000023944 270.43 2809.50 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
26. Set ENSMUSG00000054766 260.08 2701.98 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
27. Tuba1b ENSMUSG00000023004 241.61 2510.09 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Hnrnpc ENSMUSG00000060373 208.36 2164.66 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
29. Tubb5 ENSMUSG00000001525 206.15 2141.70 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Ybx1 ENSMUSG00000028639 199.50 2072.61 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
31. Chchd2 ENSMUSG00000070493 195.06 2026.48 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
32. Atp5g3 ENSMUSG00000018770 190.63 1980.46 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
33. U2af2 ENSMUSG00000030435 187.67 1949.71 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
34. Eif5a ENSMUSG00000078812 183.98 1911.37 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Ubb ENSMUSG00000019505 183.24 1903.68 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
36. Rpl4 ENSMUSG00000032399 181.76 1888.31 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Nedd4 ENSMUSG00000032216 181.02 1880.62 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
38. Eif4g2 ENSMUSG00000005610 180.28 1872.93 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Rps26 ENSMUSG00000025362 168.46 1750.13 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
40. Tpt1 ENSMUSG00000060126 164.77 1711.80 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
41. Ywhab ENSMUSG00000018326 162.55 1688.74 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
42. Eef1b2 ENSMUSG00000025967 157.38 1635.02 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
43. Pabpc1 ENSMUSG00000022283 155.90 1619.65 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
44. Banf1 ENSMUSG00000024844 152.21 1581.31 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
45. Pbx1 ENSMUSG00000052534 150.73 1565.94 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
46. Rrm2 ENSMUSG00000020649 149.25 1550.56 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
47. Meg3 ENSMUSG00000021268 148.51 1542.87 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
48. Peg3 ENSMUSG00000002265 145.56 1512.23 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
49. Myl6 ENSMUSG00000090841 144.82 1504.54 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
50. Gm14303 ENSMUSG00000081344 142.60 1481.47 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
51. Rpl18a ENSMUSG00000045128 138.91 1443.14 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
52. Grb10 ENSMUSG00000020176 135.95 1412.39 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
53. Fkbp1a ENSMUSG00000032966 130.78 1358.68 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Rpl23 ENSMUSG00000071415 127.82 1327.92 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
55. Ago2 ENSMUSG00000036698 127.09 1320.34 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
56. Ran ENSMUSG00000029430 126.35 1312.65 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
57. Cdkn1c ENSMUSG00000037664 122.65 1274.21 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
58. Pcbp1 ENSMUSG00000051695 122.65 1274.21 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
59. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 121.91 1266.53 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
60. Trim28 ENSMUSG00000005566 119.70 1243.57 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
61. Rps4x ENSMUSG00000031320 118.96 1235.88 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
62. Rplp1 ENSMUSG00000007892 118.22 1228.19 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
63. Ccnd2 ENSMUSG00000000184 117.48 1220.50 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
64. Rps20 ENSMUSG00000028234 117.48 1220.50 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
65. Rps3a1 ENSMUSG00000028081 114.53 1189.85 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
66. Ldha ENSMUSG00000063229 113.79 1182.17 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
67. Paics ENSMUSG00000029247 113.05 1174.48 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
68. Rps5 ENSMUSG00000012848 113.05 1174.48 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
69. Cox8a ENSMUSG00000035885 112.31 1166.79 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
70. Rpl8 ENSMUSG00000003970 106.40 1105.39 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
71. Hsp90aa1 ENSMUSG00000021270 104.92 1090.02 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
72. Ywhae ENSMUSG00000020849 100.49 1043.99 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
73. Ndufa12 ENSMUSG00000020022 99.75 1036.30 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
74. Son ENSMUSG00000022961 99.01 1028.62 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
75. Gm5805 ENSMUSG00000061848 95.31 990.18 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
76. 2810417H13Rik 94.58 982.59 RIKEN cDNA 2810417H13 gene
77. Col3a1 ENSMUSG00000026043 93.84 974.91 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
78. Hmgn1 ENSMUSG00000040681 93.84 974.91 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
79. Acta2 ENSMUSG00000035783 93.10 967.22 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
80. Anp32b ENSMUSG00000028333 91.62 951.84 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
81. Fscn1 ENSMUSG00000029581 91.62 951.84 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
82. Marcksl1 ENSMUSG00000047945 91.62 951.84 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
83. Malat1 ENSMUSG00000092341 87.93 913.51 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
84. Cdk4 ENSMUSG00000006728 87.19 905.82 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
85. Rpl32 ENSMUSG00000057841 87.19 905.82 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
86. Ddx39b ENSMUSG00000019432 85.71 890.44 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
87. Serbp1 ENSMUSG00000036371 84.97 882.75 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
88. Gm14586 ENSMUSG00000083621 83.49 867.38 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Rpl37 ENSMUSG00000041841 83.49 867.38 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
90. Rps9 ENSMUSG00000006333 83.49 867.38 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
91. Fkbp4 ENSMUSG00000030357 82.75 859.69 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
92. Rpl41 ENSMUSG00000093674 82.75 859.69 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
93. Actc1 ENSMUSG00000068614 82.01 852.00 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
94. Tmsb4x ENSMUSG00000049775 82.01 852.00 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
95. Ywhaz ENSMUSG00000022285 80.54 836.73 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
96. Hnrnpa2b1 ENSMUSG00000004980 79.80 829.04 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
97. Hoxc8 ENSMUSG00000001657 79.80 829.04 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
98. Kpnb1 ENSMUSG00000001440 79.80 829.04 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
99. Tecr ENSMUSG00000031708 79.06 821.36 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
100. Gm5963 ENSMUSG00000052192 78.32 813.67 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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