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Experiment Mouse_E10_5_slice_2, section s27.

Sample reads: 96,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3199.94 33246.25 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2650.80 27540.88 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2577.36 26777.86 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2049.68 21295.45 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1993.19 20708.54 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1934.43 20098.05 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Rnr2 ENSMUSG00000064339 1261.00 13101.35 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Nd2 ENSMUSG00000064345 1251.96 13007.42 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. H19 ENSMUSG00000000031 1176.25 12220.82 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Co1 ENSMUSG00000064351 1055.35 10964.72 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Actb ENSMUSG00000029580 1047.44 10882.53 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Nd5 ENSMUSG00000064367 906.20 9415.10 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. Igf2 ENSMUSG00000048583 897.16 9321.18 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Mdk ENSMUSG00000027239 644.06 6691.56 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. mt-Nd3 ENSMUSG00000064360 598.86 6221.94 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. Hmga2 ENSMUSG00000056758 517.51 5376.75 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. Eef1a1 ENSMUSG00000037742 410.16 4261.42 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. mt-Rnr1 ENSMUSG00000064337 374.00 3885.73 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
19. Rpsa ENSMUSG00000032518 368.36 3827.13 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Pkm ENSMUSG00000032294 351.41 3651.03 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
21. Cfl1 ENSMUSG00000056201 341.24 3545.36 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Npm1 ENSMUSG00000057113 326.55 3392.74 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. mt-Co3 ENSMUSG00000064358 325.42 3381.00 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
24. Set ENSMUSG00000054766 308.47 3204.89 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
25. Gm13340 ENSMUSG00000083563 296.04 3075.75 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
26. Tubb5 ENSMUSG00000001525 285.87 2970.09 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Tuba1b ENSMUSG00000023004 250.84 2606.14 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Hsp90ab1 ENSMUSG00000023944 222.60 2312.74 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Rpl4 ENSMUSG00000032399 198.87 2066.19 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Hnrnpc ENSMUSG00000060373 196.61 2042.71 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
31. Eif5a ENSMUSG00000078812 195.48 2030.97 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
32. Nedd4 ENSMUSG00000032216 195.48 2030.97 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. U2af2 ENSMUSG00000030435 189.83 1972.27 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
34. Rps26 ENSMUSG00000025362 185.31 1925.31 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
35. Ybx1 ENSMUSG00000028639 185.31 1925.31 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
36. Chchd2 ENSMUSG00000070493 184.18 1913.57 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Ubb ENSMUSG00000019505 179.66 1866.60 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
38. Eef1b2 ENSMUSG00000025967 176.27 1831.38 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
39. Tpt1 ENSMUSG00000060126 175.14 1819.64 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Eif4g2 ENSMUSG00000005610 172.88 1796.16 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
41. Peg3 ENSMUSG00000002265 161.58 1678.76 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
42. Ywhab ENSMUSG00000018326 160.45 1667.02 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
43. Rpl18a ENSMUSG00000045128 159.32 1655.28 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
44. Grb10 ENSMUSG00000020176 153.67 1596.58 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Pbx1 ENSMUSG00000052534 149.15 1549.62 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
46. Atp5g3 ENSMUSG00000018770 146.89 1526.14 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Fkbp1a ENSMUSG00000032966 143.50 1490.91 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
48. Cdkn1c ENSMUSG00000037664 140.11 1455.69 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
49. Ago2 ENSMUSG00000036698 138.98 1443.95 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
50. Rpl23 ENSMUSG00000071415 138.98 1443.95 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
51. Rps20 ENSMUSG00000028234 137.85 1432.21 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Ccnd2 ENSMUSG00000000184 135.59 1408.73 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
53. Pabpc1 ENSMUSG00000022283 132.20 1373.51 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
54. Meg3 ENSMUSG00000021268 129.94 1350.03 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
55. Ran ENSMUSG00000029430 129.94 1350.03 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
56. Rplp1 ENSMUSG00000007892 129.94 1350.03 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
57. Rrm2 ENSMUSG00000020649 129.94 1350.03 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
58. Trim28 ENSMUSG00000005566 129.94 1350.03 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
59. Cox8a ENSMUSG00000035885 127.68 1326.55 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
60. Fscn1 ENSMUSG00000029581 126.55 1314.81 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
61. Rpl37 ENSMUSG00000041841 126.55 1314.81 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
62. Hsp90aa1 ENSMUSG00000021270 125.42 1303.07 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
63. Hbb-y ENSMUSG00000052187 124.29 1291.33 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
64. Anp32b ENSMUSG00000028333 119.77 1244.37 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
65. Rpl41 ENSMUSG00000093674 119.77 1244.37 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
66. 2810417H13Rik 118.64 1232.63 RIKEN cDNA 2810417H13 gene
67. Ddx39b ENSMUSG00000019432 118.64 1232.63 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
68. Rps4x ENSMUSG00000031320 118.64 1232.63 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Rps5 ENSMUSG00000012848 116.38 1209.15 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
70. Banf1 ENSMUSG00000024844 115.25 1197.41 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
71. Gm15459 ENSMUSG00000100801 109.60 1138.71 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
72. Son ENSMUSG00000022961 108.47 1126.97 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
73. Myl6 ENSMUSG00000090841 105.08 1091.74 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
74. Gm5805 ENSMUSG00000061848 103.95 1080.00 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
75. Hoxc8 ENSMUSG00000001657 100.56 1044.78 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
76. Ldha ENSMUSG00000063229 98.30 1021.30 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
77. Rps9 ENSMUSG00000006333 98.30 1021.30 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
78. Tecr ENSMUSG00000031708 96.04 997.82 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
79. Gm9844 ENSMUSG00000091955 94.91 986.08 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
80. Pcbp1 ENSMUSG00000051695 94.91 986.08 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
81. Eef2 ENSMUSG00000034994 91.52 950.86 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
82. Rpl13a ENSMUSG00000074129 91.52 950.86 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
83. Rpl8 ENSMUSG00000003970 91.52 950.86 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
84. Gm10800 ENSMUSG00000075014 90.39 939.12 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
85. Rpl39-ps ENSMUSG00000036305 90.39 939.12 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
86. Rps3a1 ENSMUSG00000028081 89.26 927.38 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
87. Cdk4 ENSMUSG00000006728 87.00 903.90 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
88. Gm14586 ENSMUSG00000083621 87.00 903.90 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Ndufa12 ENSMUSG00000020022 87.00 903.90 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
90. Rpl32 ENSMUSG00000057841 87.00 903.90 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
91. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 87.00 903.90 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
92. Tmsb10 ENSMUSG00000079523 85.87 892.16 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
93. Malat1 ENSMUSG00000092341 84.74 880.42 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
94. Calm1 ENSMUSG00000001175 83.61 868.68 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
95. Jund ENSMUSG00000071076, ENSMUSG00000110974 81.35 845.20 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
96. Kpnb1 ENSMUSG00000001440 81.35 845.20 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
97. Sf3b4 ENSMUSG00000068856 81.35 845.20 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
98. Gm14303 ENSMUSG00000081344 80.22 833.46 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
99. Ywhae ENSMUSG00000020849 80.22 833.46 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
100. Fkbp4 ENSMUSG00000030357 77.96 809.98 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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