Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s25.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3539.17 36774.46 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3228.71 33548.56 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2470.18 25666.90 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2246.15 23339.07 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 2154.61 22387.91 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1870.40 19434.77 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. H19 ENSMUSG00000000031 1106.75 11499.91 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1047.86 10888.00 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 927.52 9637.58 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Actb ENSMUSG00000029580 862.23 8959.17 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Rnr2 ENSMUSG00000064339 806.54 8380.52 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. Mdk ENSMUSG00000027239 691.32 7183.30 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. Igf2 ENSMUSG00000048583 658.67 6844.04 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. mt-Nd3 ENSMUSG00000064360 650.99 6764.24 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Hbb-y ENSMUSG00000052187 570.98 5932.88 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. mt-Nd5 ENSMUSG00000064367 544.73 5660.13 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
17. Eef1a1 ENSMUSG00000037742 501.21 5207.92 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Rpsa ENSMUSG00000032518 383.43 3984.11 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Hmga2 ENSMUSG00000056758 352.70 3664.80 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Gm13340 ENSMUSG00000083563 334.14 3471.95 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. mt-Co3 ENSMUSG00000064358 327.74 3405.45 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
22. Npm1 ENSMUSG00000057113 325.82 3385.50 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Pkm ENSMUSG00000032294 307.25 3192.54 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Cfl1 ENSMUSG00000056201 304.69 3165.94 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. mt-Rnr1 ENSMUSG00000064337 294.45 3059.54 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
26. Gm10800 ENSMUSG00000075014 256.04 2660.44 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
27. Tuba1b ENSMUSG00000023004 254.76 2647.14 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Hba-x ENSMUSG00000055609 248.36 2580.63 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
29. Set ENSMUSG00000054766 242.60 2520.78 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
30. Tubb5 ENSMUSG00000001525 241.96 2514.13 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Eif5a ENSMUSG00000078812 233.00 2421.03 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
32. Hsp90ab1 ENSMUSG00000023944 226.60 2354.53 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Rpl18a ENSMUSG00000045128 217.00 2254.78 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
34. Hba-a1 ENSMUSG00000069919 208.04 2161.68 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
35. Eif4g2 ENSMUSG00000005610 193.31 2008.63 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Hnrnpc ENSMUSG00000060373 190.75 1982.03 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
37. Ybx1 ENSMUSG00000028639 190.11 1975.38 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
38. Nedd4 ENSMUSG00000032216 186.91 1942.13 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
39. Rpl4 ENSMUSG00000032399 183.07 1902.23 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Chchd2 ENSMUSG00000070493 181.79 1888.93 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Rps26 ENSMUSG00000025362 181.79 1888.93 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
42. Banf1 ENSMUSG00000024844 173.47 1802.48 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
43. U2af2 ENSMUSG00000030435 172.19 1789.17 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
44. Ubb ENSMUSG00000019505 168.35 1749.27 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
45. Tpt1 ENSMUSG00000060126 165.15 1716.02 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
46. Rpl23 ENSMUSG00000071415 158.75 1649.52 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
47. Grb10 ENSMUSG00000020176 153.63 1596.32 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
48. Ago2 ENSMUSG00000036698 147.87 1536.47 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
49. Atp5g3 ENSMUSG00000018770 146.59 1523.17 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
50. Cox8a ENSMUSG00000035885 145.95 1516.52 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
51. Rps20 ENSMUSG00000028234 142.74 1483.17 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Eef1b2 ENSMUSG00000025967 142.10 1476.52 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
53. Gm15459 ENSMUSG00000100801 141.46 1469.87 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
54. Ran ENSMUSG00000029430 139.54 1449.92 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
55. Meg3 ENSMUSG00000021268 138.90 1443.27 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
56. Peg3 ENSMUSG00000002265 137.62 1429.97 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
57. Rps4x ENSMUSG00000031320 135.70 1410.02 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
58. Pcbp1 ENSMUSG00000051695 133.14 1383.42 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
59. Hsp90aa1 ENSMUSG00000021270 130.58 1356.82 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
60. Ywhab ENSMUSG00000018326 129.30 1343.52 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
61. Fscn1 ENSMUSG00000029581 128.66 1336.87 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
62. Hbb-bh1 ENSMUSG00000052217 128.66 1336.87 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
63. Pabpc1 ENSMUSG00000022283 128.66 1336.87 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
64. Rps5 ENSMUSG00000012848 122.26 1270.37 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
65. Trim28 ENSMUSG00000005566 121.62 1263.72 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
66. Gm14303 ENSMUSG00000081344 120.34 1250.42 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
67. Ddx39b ENSMUSG00000019432 119.70 1243.77 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
68. Ndufa12 ENSMUSG00000020022 119.70 1243.77 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
69. Anp32b ENSMUSG00000028333 119.06 1237.12 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
70. Rplp1 ENSMUSG00000007892 119.06 1237.12 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
71. Fkbp1a ENSMUSG00000032966 118.42 1230.47 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
72. Ccnd2 ENSMUSG00000000184 113.30 1177.27 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
73. Rpl37 ENSMUSG00000041841 111.38 1157.32 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
74. Son ENSMUSG00000022961 111.38 1157.32 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
75. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 107.54 1117.42 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
76. Ldha ENSMUSG00000063229 106.90 1110.77 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
77. Cdkn1c ENSMUSG00000037664 106.26 1104.12 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
78. Rps3a1 ENSMUSG00000028081 105.62 1097.47 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
79. Col3a1 ENSMUSG00000026043 104.98 1090.82 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
80. Hba-a2 ENSMUSG00000069917 102.42 1064.22 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
81. Rps9 ENSMUSG00000006333 102.42 1064.22 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
82. Tecr ENSMUSG00000031708 101.78 1057.57 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
83. Hmgn1 ENSMUSG00000040681 98.58 1024.32 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
84. Rpl8 ENSMUSG00000003970 97.94 1017.67 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
85. Ywhae ENSMUSG00000020849 97.94 1017.67 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
86. Gm5805 ENSMUSG00000061848 94.10 977.77 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
87. 2810417H13Rik 93.46 971.11 RIKEN cDNA 2810417H13 gene
88. Rpl32 ENSMUSG00000057841 93.46 971.11 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
89. Tmsb4x ENSMUSG00000049775 89.62 931.21 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
90. Marcksl1 ENSMUSG00000047945 88.98 924.56 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
91. Paics ENSMUSG00000029247 88.98 924.56 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
92. Cdk4 ENSMUSG00000006728 87.70 911.26 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
93. Rpl41 ENSMUSG00000093674 87.70 911.26 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
94. Rrm2 ENSMUSG00000020649 87.70 911.26 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
95. Pbx1 ENSMUSG00000052534 86.41 897.86 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
96. Rpl26 ENSMUSG00000060938 85.77 891.21 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
97. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 85.13 884.56 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
98. Marcks ENSMUSG00000069662 83.85 871.26 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
99. Sf3b4 ENSMUSG00000068856 83.85 871.26 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
100. Gm10073 ENSMUSG00000060019 83.21 864.61 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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