Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s24.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3008.20 31256.57 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2800.42 29097.64 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2764.88 28728.36 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2064.09 21446.83 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1982.99 20604.17 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1595.69 16579.94 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1057.11 10983.85 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1053.46 10945.93 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. Hbb-y ENSMUSG00000052187 822.90 8550.31 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. Actb ENSMUSG00000029580 810.15 8417.83 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Rnr2 ENSMUSG00000064339 770.96 8010.62 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. mt-Nd2 ENSMUSG00000064345 716.28 7442.47 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Igf2 ENSMUSG00000048583 601.46 6249.44 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Eef1a1 ENSMUSG00000037742 587.79 6107.41 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Nd3 ENSMUSG00000064360 565.92 5880.17 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. Mdk ENSMUSG00000027239 545.87 5671.84 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Rpsa ENSMUSG00000032518 396.42 4118.98 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. mt-Nd5 ENSMUSG00000064367 386.39 4014.77 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Cfl1 ENSMUSG00000056201 353.58 3673.86 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
20. Hmga2 ENSMUSG00000056758 345.38 3588.66 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Pkm ENSMUSG00000032294 337.18 3503.45 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
22. Gm13340 ENSMUSG00000083563 336.27 3494.00 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
23. mt-Co3 ENSMUSG00000064358 293.44 3048.97 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
24. Npm1 ENSMUSG00000057113 276.12 2869.01 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Tuba1b ENSMUSG00000023004 259.72 2698.61 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Hsp90ab1 ENSMUSG00000023944 256.08 2660.79 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
27. mt-Rnr1 ENSMUSG00000064337 249.70 2594.50 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
28. Tubb5 ENSMUSG00000001525 248.78 2584.94 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Set ENSMUSG00000054766 246.96 2566.03 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
30. Hba-x ENSMUSG00000055609 245.14 2547.12 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
31. Eif5a ENSMUSG00000078812 241.49 2509.19 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
32. Hbb-bh1 ENSMUSG00000052217 241.49 2509.19 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
33. Hba-a1 ENSMUSG00000069919 224.18 2329.33 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
34. Rpl4 ENSMUSG00000032399 217.80 2263.04 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Nedd4 ENSMUSG00000032216 212.33 2206.21 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
36. Ybx1 ENSMUSG00000028639 210.51 2187.29 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
37. Hnrnpc ENSMUSG00000060373 197.75 2054.71 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
38. Ubb ENSMUSG00000019505 197.75 2054.71 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
39. Tpt1 ENSMUSG00000060126 195.02 2026.35 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Rps26 ENSMUSG00000025362 194.11 2016.89 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
41. Rpl18a ENSMUSG00000045128 193.20 2007.44 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
42. Ywhab ENSMUSG00000018326 192.28 1997.88 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
43. Atp5g3 ENSMUSG00000018770 187.73 1950.60 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Chchd2 ENSMUSG00000070493 186.82 1941.14 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
45. U2af2 ENSMUSG00000030435 186.82 1941.14 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
46. Rpl23 ENSMUSG00000071415 182.26 1893.76 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
47. Trim28 ENSMUSG00000005566 170.41 1770.64 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
48. Eif4g2 ENSMUSG00000005610 164.95 1713.91 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
49. Rps20 ENSMUSG00000028234 160.39 1666.53 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
50. Grb10 ENSMUSG00000020176 154.92 1609.69 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
51. Hba-a2 ENSMUSG00000069917 149.45 1552.85 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
52. Peg3 ENSMUSG00000002265 146.72 1524.49 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
53. Rpl37 ENSMUSG00000041841 145.81 1515.03 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
54. Hsp90aa1 ENSMUSG00000021270 141.25 1467.65 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
55. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 139.43 1448.74 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
56. Fkbp1a ENSMUSG00000032966 137.61 1429.83 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Ran ENSMUSG00000029430 137.61 1429.83 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
58. Pcbp1 ENSMUSG00000051695 135.78 1410.82 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
59. Pabpc1 ENSMUSG00000022283 134.87 1401.36 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
60. Rplp1 ENSMUSG00000007892 134.87 1401.36 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
61. Cox8a ENSMUSG00000035885 132.14 1372.99 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
62. Rrm2 ENSMUSG00000020649 131.23 1363.54 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
63. Ccnd2 ENSMUSG00000000184 127.58 1325.61 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
64. Ndufa12 ENSMUSG00000020022 127.58 1325.61 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
65. Myl6 ENSMUSG00000090841 126.67 1316.16 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
66. Eef1b2 ENSMUSG00000025967 124.85 1297.25 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
67. Rps5 ENSMUSG00000012848 124.85 1297.25 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
68. Ago2 ENSMUSG00000036698 123.03 1278.34 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
69. Rps4x ENSMUSG00000031320 121.20 1259.32 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
70. Tmsb4x ENSMUSG00000049775 120.29 1249.87 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
71. Banf1 ENSMUSG00000024844 118.47 1230.96 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
72. Pbx1 ENSMUSG00000052534 113.00 1174.12 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
73. Anp32b ENSMUSG00000028333 112.09 1164.67 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
74. Ddx39b ENSMUSG00000019432 110.27 1145.76 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
75. 2810417H13Rik 109.36 1136.30 RIKEN cDNA 2810417H13 gene
76. Gm10800 ENSMUSG00000075014 107.53 1117.29 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
77. Meg3 ENSMUSG00000021268 107.53 1117.29 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
78. Fscn1 ENSMUSG00000029581 106.62 1107.83 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
79. Rpl32 ENSMUSG00000057841 106.62 1107.83 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
80. Rps3a1 ENSMUSG00000028081 106.62 1107.83 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
81. Cdk4 ENSMUSG00000006728 101.15 1050.99 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
82. Sub1 ENSMUSG00000022205 100.24 1041.54 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
83. Gm5805 ENSMUSG00000061848 99.33 1032.08 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
84. Ywhae ENSMUSG00000020849 99.33 1032.08 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
85. Rpl8 ENSMUSG00000003970 98.42 1022.63 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
86. Hmgn1 ENSMUSG00000040681 96.60 1003.72 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
87. Lamp1 ENSMUSG00000031447 96.60 1003.72 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
88. Gm14586 ENSMUSG00000083621 95.69 994.26 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Tecr ENSMUSG00000031708 94.78 984.81 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
90. Gm14303 ENSMUSG00000081344 93.86 975.25 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
91. Ldha ENSMUSG00000063229 92.95 965.79 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
92. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 89.31 927.97 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
93. Paics ENSMUSG00000029247 89.31 927.97 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
94. Rpl39-ps ENSMUSG00000036305 89.31 927.97 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
95. Ywhaz ENSMUSG00000022285 89.31 927.97 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
96. Hnrnpa0 ENSMUSG00000007836 88.40 918.52 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
97. Cdkn1c ENSMUSG00000037664 87.48 908.96 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
98. Marcks ENSMUSG00000069662 87.48 908.96 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
99. Ngfrap1 87.48 908.96 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
100. Tcf4 ENSMUSG00000053477 87.48 908.96 transcription factor 4 [Source:MGI Symbol;Acc:MGI:98506]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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