Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E10_5_slice_2, section s23.

Sample reads: 96,228. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3921.35 40750.77 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2647.84 27516.42 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Nd1 ENSMUSG00000064341 2238.13 23258.70 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. Ptma ENSMUSG00000026238 2215.01 23018.44 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Nd4 ENSMUSG00000064363 1935.70 20115.84 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1889.46 19635.32 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Rnr2 ENSMUSG00000064339 1717.44 17847.68 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1135.71 11802.33 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1110.74 11542.84 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Hbb-y ENSMUSG00000052187 972.94 10110.82 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. Actb ENSMUSG00000029580 898.95 9341.91 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. H19 ENSMUSG00000000031 860.11 8938.29 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Nd3 ENSMUSG00000064360 632.60 6574.00 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Igf2 ENSMUSG00000048583 560.46 5824.31 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. mt-Nd5 ENSMUSG00000064367 552.13 5737.75 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
16. Eef1a1 ENSMUSG00000037742 508.67 5286.11 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Mdk ENSMUSG00000027239 480.00 4988.17 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. mt-Co3 ENSMUSG00000064358 462.42 4805.48 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Rpsa ENSMUSG00000032518 418.96 4353.84 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Gm10800 ENSMUSG00000075014 394.91 4103.91 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
21. Gm13340 ENSMUSG00000083563 356.99 3709.85 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Hmga2 ENSMUSG00000056758 339.42 3527.26 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Pkm ENSMUSG00000032294 329.25 3421.57 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Npm1 ENSMUSG00000057113 296.88 3085.18 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Hba-a1 ENSMUSG00000069919 295.03 3065.96 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
26. Set ENSMUSG00000054766 284.85 2960.17 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
27. Cfl1 ENSMUSG00000056201 274.68 2854.48 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Hba-x ENSMUSG00000055609 263.58 2739.13 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
29. mt-Rnr1 ENSMUSG00000064337 246.01 2556.54 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
30. Tubb5 ENSMUSG00000001525 230.29 2393.18 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Hsp90ab1 ENSMUSG00000023944 225.66 2345.06 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Hnrnpc ENSMUSG00000060373 217.34 2258.60 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
33. Tuba1b ENSMUSG00000023004 215.49 2239.38 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
34. Rpl4 ENSMUSG00000032399 209.94 2181.70 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Rps26 ENSMUSG00000025362 208.09 2162.48 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
36. Chchd2 ENSMUSG00000070493 205.32 2133.69 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Nedd4 ENSMUSG00000032216 202.54 2104.80 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
38. Tpt1 ENSMUSG00000060126 187.74 1951.00 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Malat1 ENSMUSG00000092341 180.35 1874.20 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
40. Ybx1 ENSMUSG00000028639 179.42 1864.54 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
41. Eif5a ENSMUSG00000078812 174.80 1816.53 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. Hbb-bh1 ENSMUSG00000052217 172.95 1797.30 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
43. Pabpc1 ENSMUSG00000022283 165.55 1720.40 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
44. Eef1b2 ENSMUSG00000025967 164.62 1710.74 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
45. Rpl23 ENSMUSG00000071415 164.62 1710.74 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Rps4x ENSMUSG00000031320 162.77 1691.51 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
47. Ubb ENSMUSG00000019505 159.07 1653.06 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
48. Eif4g2 ENSMUSG00000005610 157.22 1633.83 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
49. Rps20 ENSMUSG00000028234 157.22 1633.83 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
50. U2af2 ENSMUSG00000030435 157.22 1633.83 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
51. Rrm2 ENSMUSG00000020649 153.52 1595.38 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
52. Grb10 ENSMUSG00000020176 147.98 1537.81 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
53. Rpl18a ENSMUSG00000045128 147.05 1528.15 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
54. Atp5g3 ENSMUSG00000018770 146.13 1518.59 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
55. Ywhab ENSMUSG00000018326 145.20 1508.92 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
56. Banf1 ENSMUSG00000024844 141.50 1470.47 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
57. Hba-a2 ENSMUSG00000069917 135.95 1412.80 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
58. Hsp90aa1 ENSMUSG00000021270 134.10 1393.57 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. 2810417H13Rik 127.63 1326.33 RIKEN cDNA 2810417H13 gene
60. Rpl37 ENSMUSG00000041841 126.70 1316.67 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
61. Rps5 ENSMUSG00000012848 125.78 1307.11 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
62. Rpl32 ENSMUSG00000057841 124.85 1297.44 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
63. Ccnd2 ENSMUSG00000000184 123.93 1287.88 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
64. Son ENSMUSG00000022961 122.08 1268.66 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
65. Fkbp1a ENSMUSG00000032966 115.61 1201.42 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
66. Rplp1 ENSMUSG00000007892 115.61 1201.42 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
67. Ran ENSMUSG00000029430 112.83 1172.53 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
68. Tmsb4x ENSMUSG00000049775 112.83 1172.53 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
69. Paics ENSMUSG00000029247 110.06 1143.75 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
70. Gm15459 ENSMUSG00000100801 105.43 1095.63 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
71. Calm1 ENSMUSG00000001175 103.58 1076.41 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
72. Tecr ENSMUSG00000031708 102.66 1066.85 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
73. Ddx39b ENSMUSG00000019432 101.73 1057.18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
74. Gm14303 ENSMUSG00000081344 101.73 1057.18 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
75. Trim28 ENSMUSG00000005566 101.73 1057.18 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
76. Cox8a ENSMUSG00000035885 100.81 1047.62 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
77. Gm17132 ENSMUSG00000061331 99.88 1037.96 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
78. Peg3 ENSMUSG00000002265 98.96 1028.39 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
79. Rps3a1 ENSMUSG00000028081 98.96 1028.39 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
80. Ago2 ENSMUSG00000036698 96.18 999.51 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
81. Lamp1 ENSMUSG00000031447 96.18 999.51 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
82. Gm5963 ENSMUSG00000052192 95.26 989.94 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
83. Gm5805 ENSMUSG00000061848 92.48 961.05 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
84. Anp32b ENSMUSG00000028333 91.56 951.49 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
85. Col3a1 ENSMUSG00000026043 91.56 951.49 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
86. Ywhae ENSMUSG00000020849 91.56 951.49 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
87. Gm14586 ENSMUSG00000083621 90.63 941.83 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
88. Myl6 ENSMUSG00000090841 89.71 932.27 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
89. Ndufa12 ENSMUSG00000020022 89.71 932.27 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
90. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 89.71 932.27 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
91. Ldha ENSMUSG00000063229 88.79 922.71 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
92. Pcbp1 ENSMUSG00000051695 88.79 922.71 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
93. Cdkn1c ENSMUSG00000037664 87.86 913.04 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
94. Eef2 ENSMUSG00000034994 87.86 913.04 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
95. Hmgn1 ENSMUSG00000040681 86.94 903.48 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
96. Pbx1 ENSMUSG00000052534 86.94 903.48 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
97. Rpl8 ENSMUSG00000003970 86.01 893.82 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
98. Sub1 ENSMUSG00000022205 86.01 893.82 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
99. Serbp1 ENSMUSG00000036371 85.09 884.26 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
100. Rpl39-ps ENSMUSG00000036305 84.16 874.59 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA