Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s22.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4632.97 48138.74 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 3247.09 33738.79 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Nd1 ENSMUSG00000064341 2542.24 26415.07 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. Ptma ENSMUSG00000026238 2399.91 24936.19 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Nd4 ENSMUSG00000064363 2139.08 22226.05 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 2079.15 21603.35 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Rnr2 ENSMUSG00000064339 1496.88 15553.29 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1321.18 13727.68 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 995.65 10345.27 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Hbb-y ENSMUSG00000052187 785.21 8158.70 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. H19 ENSMUSG00000000031 711.66 7394.48 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. mt-Nd3 ENSMUSG00000064360 674.21 7005.36 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 653.10 6786.02 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Co3 ENSMUSG00000064358 544.81 5660.83 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Eef1a1 ENSMUSG00000037742 525.06 5455.62 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Rpsa ENSMUSG00000032518 489.65 5087.69 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
17. Gm13340 ENSMUSG00000083563 454.24 4719.77 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Nd5 ENSMUSG00000064367 419.51 4358.91 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Mdk ENSMUSG00000027239 367.75 3821.10 midkine [Source:MGI Symbol;Acc:MGI:96949]
20. Igf2 ENSMUSG00000048583 330.97 3438.93 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
21. Npm1 ENSMUSG00000057113 323.48 3361.11 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Pkm ENSMUSG00000032294 301.01 3127.64 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. Hmga2 ENSMUSG00000056758 293.52 3049.81 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Hbb-bh1 ENSMUSG00000052217 255.38 2653.52 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
25. Set ENSMUSG00000054766 250.61 2603.96 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
26. Rpl4 ENSMUSG00000032399 226.10 2349.29 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
27. Tuba1b ENSMUSG00000023004 224.05 2327.98 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Hnrnpc ENSMUSG00000060373 219.97 2285.59 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
29. mt-Rnr1 ENSMUSG00000064337 214.52 2228.96 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
30. Rps20 ENSMUSG00000028234 204.99 2129.94 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
31. Tpt1 ENSMUSG00000060126 202.94 2108.64 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Rps26 ENSMUSG00000025362 200.22 2080.38 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
33. Chchd2 ENSMUSG00000070493 198.18 2059.18 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Eif4g2 ENSMUSG00000005610 184.56 1917.67 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Cfl1 ENSMUSG00000056201 182.51 1896.36 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
36. Hba-a1 ENSMUSG00000069919 181.83 1889.30 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
37. Tmsb4x ENSMUSG00000049775 177.75 1846.91 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
38. Tubb5 ENSMUSG00000001525 177.75 1846.91 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
39. Nedd4 ENSMUSG00000032216 177.06 1839.74 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
40. Malat1 ENSMUSG00000092341 175.02 1818.54 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
41. Rpl18a ENSMUSG00000045128 172.98 1797.34 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
42. Ywhab ENSMUSG00000018326 172.98 1797.34 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
43. Ybx1 ENSMUSG00000028639 166.85 1733.65 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
44. Hsp90aa1 ENSMUSG00000021270 165.49 1719.52 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
45. Rpl23 ENSMUSG00000071415 162.08 1684.09 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Hsp90ab1 ENSMUSG00000023944 158.00 1641.69 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
47. Ubb ENSMUSG00000019505 158.00 1641.69 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
48. Pabpc1 ENSMUSG00000022283 150.51 1563.87 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
49. Banf1 ENSMUSG00000024844 148.46 1542.57 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
50. Gm10800 ENSMUSG00000075014 148.46 1542.57 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
51. Rpl37 ENSMUSG00000041841 141.65 1471.81 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
52. Rps4x ENSMUSG00000031320 140.29 1457.68 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
53. Gm5805 ENSMUSG00000061848 136.88 1422.25 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
54. Atp5g3 ENSMUSG00000018770 134.84 1401.05 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
55. Rrm2 ENSMUSG00000020649 134.84 1401.05 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
56. Rps3a1 ENSMUSG00000028081 134.16 1393.99 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
57. Rplp1 ENSMUSG00000007892 133.48 1386.92 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
58. Fkbp1a ENSMUSG00000032966 132.80 1379.85 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
59. Grb10 ENSMUSG00000020176 131.44 1365.72 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
60. Gm14303 ENSMUSG00000081344 130.76 1358.66 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
61. Myl6 ENSMUSG00000090841 130.76 1358.66 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
62. 2810417H13Rik 130.07 1351.49 RIKEN cDNA 2810417H13 gene
63. Eef1b2 ENSMUSG00000025967 130.07 1351.49 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
64. Son ENSMUSG00000022961 128.71 1337.36 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
65. Rpl32 ENSMUSG00000057841 125.31 1302.03 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
66. Ran ENSMUSG00000029430 122.58 1273.66 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
67. Rps5 ENSMUSG00000012848 122.58 1273.66 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
68. Rpl26 ENSMUSG00000060938 118.50 1231.27 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
69. Peg3 ENSMUSG00000002265 116.45 1209.97 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
70. Ndufa12 ENSMUSG00000020022 113.05 1174.64 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
71. Gm14586 ENSMUSG00000083621 112.37 1167.58 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
72. Eif5a ENSMUSG00000078812 108.28 1125.08 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
73. Hba-a2 ENSMUSG00000069917 107.60 1118.01 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
74. Rpl39-ps ENSMUSG00000036305 104.88 1089.75 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
75. Cox8a ENSMUSG00000035885 104.20 1082.69 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
76. Tubb2b ENSMUSG00000045136 103.51 1075.52 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
77. Calm1 ENSMUSG00000001175 101.47 1054.32 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
78. Paics ENSMUSG00000029247 101.47 1054.32 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
79. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 100.11 1040.19 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
80. Ccnd2 ENSMUSG00000000184 98.75 1026.06 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
81. Tpm4 ENSMUSG00000031799 98.75 1026.06 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
82. Hba-x ENSMUSG00000055609 98.07 1018.99 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
83. Trim28 ENSMUSG00000005566 98.07 1018.99 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
84. U2af2 ENSMUSG00000030435 98.07 1018.99 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
85. Ago2 ENSMUSG00000036698 97.39 1011.93 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
86. Rpl41 ENSMUSG00000093674 96.70 1004.76 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
87. Ldha ENSMUSG00000063229 95.34 990.63 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
88. Srsf3 ENSMUSG00000071172 94.66 983.56 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
89. Sub1 ENSMUSG00000022205 93.98 976.50 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
90. Gm5963 ENSMUSG00000052192 91.94 955.30 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
91. Wbp5 90.58 941.17 WW domain binding protein 5
92. Cdkn1c ENSMUSG00000037664 88.53 919.87 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
93. Pcbp1 ENSMUSG00000051695 87.85 912.80 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
94. Rpl8 ENSMUSG00000003970 87.17 905.74 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
95. Lamp1 ENSMUSG00000031447 85.81 891.61 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
96. Rps9 ENSMUSG00000006333 85.81 891.61 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
97. Col3a1 ENSMUSG00000026043 84.45 877.48 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
98. Serbp1 ENSMUSG00000036371 84.45 877.48 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
99. Hmgn1 ENSMUSG00000040681 83.77 870.41 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
100. Fkbp4 ENSMUSG00000030357 83.08 863.24 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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