Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s21.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3775.44 39228.80 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2729.21 28357.92 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2603.27 27049.34 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2241.62 23291.61 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 2126.94 22100.02 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1795.55 18656.71 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Rnr2 ENSMUSG00000064339 1389.58 14438.47 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1176.39 12223.31 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 920.29 9562.30 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Hbb-y ENSMUSG00000052187 836.56 8692.30 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. Actb ENSMUSG00000029580 807.72 8392.63 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. H19 ENSMUSG00000000031 755.65 7851.60 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Nd3 ENSMUSG00000064360 550.20 5716.87 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Eef1a1 ENSMUSG00000037742 548.09 5694.94 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Mdk ENSMUSG00000027239 481.96 5007.82 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Hba-x ENSMUSG00000055609 446.78 4642.28 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
17. mt-Nd5 ENSMUSG00000064367 416.52 4327.86 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. Rpsa ENSMUSG00000032518 401.75 4174.39 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Pkm ENSMUSG00000032294 389.79 4050.12 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. Gm13340 ENSMUSG00000083563 382.75 3976.97 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Igf2 ENSMUSG00000048583 380.64 3955.05 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. Cfl1 ENSMUSG00000056201 376.42 3911.20 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. mt-Co3 ENSMUSG00000064358 341.94 3552.94 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
24. Hmga2 ENSMUSG00000056758 287.06 2982.70 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
25. Hba-a1 ENSMUSG00000069919 261.03 2712.24 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
26. Npm1 ENSMUSG00000057113 248.37 2580.69 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Tuba1b ENSMUSG00000023004 239.92 2492.89 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Tubb5 ENSMUSG00000001525 237.81 2470.97 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Nedd4 ENSMUSG00000032216 225.85 2346.70 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
30. Hnrnpc ENSMUSG00000060373 219.52 2280.93 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
31. Chchd2 ENSMUSG00000070493 211.08 2193.23 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
32. Set ENSMUSG00000054766 208.96 2171.20 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
33. Ubb ENSMUSG00000019505 208.96 2171.20 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Rpl4 ENSMUSG00000032399 206.15 2142.01 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. U2af2 ENSMUSG00000030435 199.82 2076.23 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
36. Hsp90ab1 ENSMUSG00000023944 195.60 2032.39 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Hbb-bh1 ENSMUSG00000052217 192.78 2003.09 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
38. mt-Rnr1 ENSMUSG00000064337 192.08 1995.81 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
39. Rps26 ENSMUSG00000025362 188.56 1959.24 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
40. Ybx1 ENSMUSG00000028639 187.86 1951.96 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
41. Rpl18a ENSMUSG00000045128 184.34 1915.39 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
42. Eif4g2 ENSMUSG00000005610 183.64 1908.12 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
43. Eif5a ENSMUSG00000078812 170.97 1776.47 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
44. Tubb2b ENSMUSG00000045136 169.56 1761.82 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
45. Rpl37 ENSMUSG00000041841 168.16 1747.27 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
46. Rps20 ENSMUSG00000028234 166.05 1725.35 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
47. Tmsb4x ENSMUSG00000049775 164.64 1710.70 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
48. Tpt1 ENSMUSG00000060126 161.82 1681.39 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
49. Malat1 ENSMUSG00000092341 160.42 1666.85 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
50. Trp53i11 ENSMUSG00000068735 156.20 1623.00 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
51. Gm10800 ENSMUSG00000075014 155.49 1615.62 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
52. Eef1b2 ENSMUSG00000025967 154.79 1608.35 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
53. Rplp1 ENSMUSG00000007892 154.79 1608.35 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
54. Hba-a2 ENSMUSG00000069917 151.97 1579.05 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
55. Banf1 ENSMUSG00000024844 149.16 1549.85 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
56. Ywhab ENSMUSG00000018326 147.05 1527.93 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
57. Atp5g3 ENSMUSG00000018770 146.35 1520.65 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
58. Cox8a ENSMUSG00000035885 146.35 1520.65 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
59. Gm14303 ENSMUSG00000081344 144.94 1506.00 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
60. Fkbp1a ENSMUSG00000032966 144.23 1498.63 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
61. Ran ENSMUSG00000029430 137.20 1425.58 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
62. Grb10 ENSMUSG00000020176 134.38 1396.28 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
63. Myl6 ENSMUSG00000090841 132.98 1381.73 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
64. Rpl23 ENSMUSG00000071415 132.98 1381.73 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
65. Pabpc1 ENSMUSG00000022283 131.57 1367.08 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Hsp90aa1 ENSMUSG00000021270 128.76 1337.88 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
67. Rrm2 ENSMUSG00000020649 125.94 1308.58 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
68. Tuba1a ENSMUSG00000072235 125.94 1308.58 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
69. Ndufa12 ENSMUSG00000020022 122.42 1272.01 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
70. Pcbp1 ENSMUSG00000051695 119.61 1242.81 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
71. Tecr ENSMUSG00000031708 119.61 1242.81 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
72. Rps5 ENSMUSG00000012848 117.50 1220.89 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
73. Rpl32 ENSMUSG00000057841 116.09 1206.24 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
74. Son ENSMUSG00000022961 114.68 1191.59 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
75. Rps4x ENSMUSG00000031320 109.76 1140.46 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
76. Rps3a1 ENSMUSG00000028081 109.06 1133.19 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
77. Ccnd2 ENSMUSG00000000184 107.65 1118.54 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
78. Trim28 ENSMUSG00000005566 107.65 1118.54 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
79. Gm5805 ENSMUSG00000061848 105.54 1096.62 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
80. Ago2 ENSMUSG00000036698 103.43 1074.69 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
81. 2810417H13Rik 102.72 1067.31 RIKEN cDNA 2810417H13 gene
82. Cdkn1c ENSMUSG00000037664 102.02 1060.04 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
83. Anp32b ENSMUSG00000028333 101.32 1052.77 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
84. Rpl8 ENSMUSG00000003970 100.61 1045.39 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
85. Paics ENSMUSG00000029247 99.91 1038.12 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
86. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 97.80 1016.19 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
87. Rpl26 ENSMUSG00000060938 97.09 1008.82 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
88. Ddx39b ENSMUSG00000019432 96.39 1001.54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
89. Ywhae ENSMUSG00000020849 94.28 979.62 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
90. Ywhaz ENSMUSG00000022285 94.28 979.62 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
91. Pbx1 ENSMUSG00000052534 93.58 972.35 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
92. Basp1 ENSMUSG00000045763 91.47 950.42 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
93. Gm14586 ENSMUSG00000083621 90.76 943.04 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
94. Ldha ENSMUSG00000063229 89.36 928.50 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
95. Serbp1 ENSMUSG00000036371 89.36 928.50 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
96. Rpl41 ENSMUSG00000093674 88.65 921.12 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
97. Sub1 ENSMUSG00000022205 87.95 913.85 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
98. Lamp1 ENSMUSG00000031447 87.24 906.47 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
99. Cd24a ENSMUSG00000047139 85.13 884.55 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
100. Marcksl1 ENSMUSG00000047945 84.43 877.27 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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