Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s20.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3139.91 32626.49 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2731.79 28385.75 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Co2 ENSMUSG00000064354 2590.75 26920.22 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Nd1 ENSMUSG00000064341 2247.65 23355.10 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Atp6 ENSMUSG00000064357 2217.64 23043.27 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Nd4 ENSMUSG00000064363 1506.44 15653.26 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1146.33 11911.40 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1136.33 11807.49 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Hbb-y ENSMUSG00000052187 885.26 9198.65 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Nd2 ENSMUSG00000064345 852.25 8855.64 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. H19 ENSMUSG00000000031 781.23 8117.68 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. mt-Nd3 ENSMUSG00000064360 687.20 7140.63 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 650.19 6756.06 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Eef1a1 ENSMUSG00000037742 607.18 6309.15 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Rpsa ENSMUSG00000032518 502.15 5217.79 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. mt-Nd5 ENSMUSG00000064367 456.13 4739.60 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
17. mt-Co3 ENSMUSG00000064358 427.12 4438.16 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Cfl1 ENSMUSG00000056201 405.12 4209.56 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
19. Igf2 ENSMUSG00000048583 401.12 4168.00 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
20. Gm13340 ENSMUSG00000083563 336.10 3492.38 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. mt-Rnr1 ENSMUSG00000064337 323.09 3357.20 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
22. Mdk ENSMUSG00000027239 316.09 3284.46 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. Pkm ENSMUSG00000032294 304.09 3159.77 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Npm1 ENSMUSG00000057113 276.08 2868.72 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Tpt1 ENSMUSG00000060126 250.07 2598.45 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
26. Rps26 ENSMUSG00000025362 249.07 2588.06 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
27. Set ENSMUSG00000054766 247.07 2567.28 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
28. Hnrnpc ENSMUSG00000060373 239.07 2484.15 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
29. Tubb2b ENSMUSG00000045136 232.07 2411.42 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
30. Hbb-bh1 ENSMUSG00000052217 226.07 2349.07 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
31. Tuba1b ENSMUSG00000023004 223.06 2317.79 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
32. Ubb ENSMUSG00000019505 220.06 2286.62 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Hmga2 ENSMUSG00000056758 216.06 2245.06 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
34. Tmsb4x ENSMUSG00000049775 215.06 2234.67 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
35. Rplp1 ENSMUSG00000007892 214.06 2224.28 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
36. Chchd2 ENSMUSG00000070493 209.06 2172.32 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Hba-a1 ENSMUSG00000069919 206.06 2141.15 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
38. Eif4g2 ENSMUSG00000005610 202.06 2099.58 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Rpl4 ENSMUSG00000032399 195.06 2026.85 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Rpl18a ENSMUSG00000045128 192.06 1995.68 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
41. Tubb5 ENSMUSG00000001525 190.06 1974.89 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
42. Nedd4 ENSMUSG00000032216 183.05 1902.05 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
43. Ywhab ENSMUSG00000018326 182.05 1891.66 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
44. Atp5g3 ENSMUSG00000018770 180.05 1870.88 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. U2af2 ENSMUSG00000030435 164.05 1704.63 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
46. Tuba1a ENSMUSG00000072235 162.05 1683.85 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
47. Hsp90ab1 ENSMUSG00000023944 157.05 1631.89 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
48. Hba-x ENSMUSG00000055609 156.05 1621.50 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
49. Rpl23 ENSMUSG00000071415 156.05 1621.50 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
50. Ybx1 ENSMUSG00000028639 156.05 1621.50 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
51. Malat1 ENSMUSG00000092341 151.04 1569.44 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
52. Rpl37 ENSMUSG00000041841 150.04 1559.05 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
53. Rps20 ENSMUSG00000028234 148.04 1538.27 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
54. Rps4x ENSMUSG00000031320 147.04 1527.88 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
55. Rps5 ENSMUSG00000012848 145.04 1507.10 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
56. Gm10800 ENSMUSG00000075014 141.04 1465.53 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
57. Grb10 ENSMUSG00000020176 140.04 1455.14 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
58. Fkbp1a ENSMUSG00000032966 137.04 1423.97 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
59. Hsp90aa1 ENSMUSG00000021270 135.04 1403.19 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
60. Eef1b2 ENSMUSG00000025967 132.04 1372.01 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
61. Ran ENSMUSG00000029430 132.04 1372.01 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
62. Gm14303 ENSMUSG00000081344 127.04 1320.06 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
63. Cox8a ENSMUSG00000035885 126.04 1309.67 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
64. Pabpc1 ENSMUSG00000022283 126.04 1309.67 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
65. Basp1 ENSMUSG00000045763 125.04 1299.28 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
66. Eif5a ENSMUSG00000078812 125.04 1299.28 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
67. Gm5805 ENSMUSG00000061848 123.04 1278.50 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
68. Rps3a1 ENSMUSG00000028081 123.04 1278.50 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
69. Son ENSMUSG00000022961 121.04 1257.71 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
70. Trim28 ENSMUSG00000005566 119.03 1236.83 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
71. Tecr ENSMUSG00000031708 114.03 1184.87 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
72. Paics ENSMUSG00000029247 113.03 1174.48 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
73. Ywhae ENSMUSG00000020849 111.03 1153.70 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
74. Rrm2 ENSMUSG00000020649 109.03 1132.92 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
75. Trp53i11 ENSMUSG00000068735 109.03 1132.92 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
76. 2810417H13Rik 108.03 1122.53 RIKEN cDNA 2810417H13 gene
77. Gm14586 ENSMUSG00000083621 108.03 1122.53 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
78. Pcbp1 ENSMUSG00000051695 108.03 1122.53 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
79. Rpl26 ENSMUSG00000060938 108.03 1122.53 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
80. Cdkn1c ENSMUSG00000037664 106.03 1101.75 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
81. Gm5963 ENSMUSG00000052192 106.03 1101.75 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
82. Rpl39-ps ENSMUSG00000036305 106.03 1101.75 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
83. Hba-a2 ENSMUSG00000069917 104.03 1080.97 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
84. Rpl32 ENSMUSG00000057841 103.03 1070.57 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
85. Calm1 ENSMUSG00000001175 102.03 1060.18 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
86. Myl6 ENSMUSG00000090841 101.03 1049.79 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
87. Ago2 ENSMUSG00000036698 100.03 1039.40 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
88. Pbx1 ENSMUSG00000052534 100.03 1039.40 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
89. Map1b ENSMUSG00000052727 98.03 1018.62 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
90. Ldha ENSMUSG00000063229 97.03 1008.23 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
91. Gm9846 Gm9846 95.03 987.45
92. Ddx39b ENSMUSG00000019432 94.03 977.06 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
93. Gm9844 ENSMUSG00000091955 93.03 966.67 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
94. Banf1 ENSMUSG00000024844 90.03 935.49 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
95. Sub1 ENSMUSG00000022205 90.03 935.49 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
96. Caprin1 ENSMUSG00000027184 89.03 925.10 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
97. Lamp1 ENSMUSG00000031447 88.03 914.71 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
98. Gm10073 ENSMUSG00000060019 87.03 904.32 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
99. Hmgn1 ENSMUSG00000040681 87.03 904.32 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
100. Mapre1 ENSMUSG00000027479 85.02 883.43 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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