Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s16.

Sample reads: 96,263. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3423.89 35567.91 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2945.32 30596.45 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2895.10 30074.76 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd1 ENSMUSG00000064341 2595.12 26958.52 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2278.41 23668.48 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Rnr2 ENSMUSG00000064339 1805.42 18754.99 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
7. mt-Nd4 ENSMUSG00000064363 1356.16 14088.01 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
8. mt-Co1 ENSMUSG00000064351 1245.94 12943.02 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 774.35 8044.07 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Actb ENSMUSG00000029580 680.87 7072.99 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. Eef1a1 ENSMUSG00000037742 666.92 6928.07 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Nd3 ENSMUSG00000064360 661.34 6870.10 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. H19 ENSMUSG00000000031 542.74 5638.07 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Rpsa ENSMUSG00000032518 482.75 5014.88 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. mt-Co3 ENSMUSG00000064358 428.33 4449.56 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Gm13340 ENSMUSG00000083563 393.45 4087.22 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Mdk ENSMUSG00000027239 376.71 3913.32 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Pkm ENSMUSG00000032294 362.76 3768.41 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
19. Cfl1 ENSMUSG00000056201 358.57 3724.88 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
20. Igf2 ENSMUSG00000048583 329.27 3420.51 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
21. mt-Nd5 ENSMUSG00000064367 313.93 3261.15 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Gm10800 ENSMUSG00000075014 297.18 3087.15 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
23. Npm1 ENSMUSG00000057113 288.81 3000.20 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Hbb-y ENSMUSG00000052187 287.42 2985.76 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
25. Set ENSMUSG00000054766 283.23 2942.24 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
26. Rps26 ENSMUSG00000025362 276.25 2869.73 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
27. Tmsb4x ENSMUSG00000049775 270.67 2811.76 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
28. mt-Rnr1 ENSMUSG00000064337 267.88 2782.78 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
29. Tuba1b ENSMUSG00000023004 259.51 2695.83 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
30. Hmga2 ENSMUSG00000056758 248.35 2579.90 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
31. Tubb2b ENSMUSG00000045136 239.98 2492.95 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
32. Rpl23 ENSMUSG00000071415 227.42 2362.48 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
33. Hnrnpc ENSMUSG00000060373 221.84 2304.51 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
34. Tubb5 ENSMUSG00000001525 214.86 2232.00 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
35. Ubb ENSMUSG00000019505 212.07 2203.02 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
36. Eif4g2 ENSMUSG00000005610 205.10 2130.61 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Rpl18a ENSMUSG00000045128 200.91 2087.08 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
38. Tpt1 ENSMUSG00000060126 191.15 1985.70 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Chchd2 ENSMUSG00000070493 189.75 1971.15 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Nedd4 ENSMUSG00000032216 189.75 1971.15 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
41. Rplp1 ENSMUSG00000007892 188.36 1956.71 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
42. Rpl4 ENSMUSG00000032399 181.38 1884.20 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Atp5g3 ENSMUSG00000018770 179.98 1869.66 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Ybx1 ENSMUSG00000028639 173.01 1797.26 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
45. Rps20 ENSMUSG00000028234 171.61 1782.71 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
46. Hsp90ab1 ENSMUSG00000023944 168.82 1753.73 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
47. Malat1 ENSMUSG00000092341 168.82 1753.73 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
48. Rps3a1 ENSMUSG00000028081 160.45 1666.78 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
49. Eef1b2 ENSMUSG00000025967 156.27 1623.36 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
50. U2af2 ENSMUSG00000030435 153.47 1594.27 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
51. Cox8a ENSMUSG00000035885 152.08 1579.83 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
52. Ywhab ENSMUSG00000018326 152.08 1579.83 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Rps5 ENSMUSG00000012848 150.68 1565.29 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
54. Rps4x ENSMUSG00000031320 149.29 1550.85 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
55. Pabpc1 ENSMUSG00000022283 143.71 1492.88 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
56. Tuba1a ENSMUSG00000072235 143.71 1492.88 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
57. Grb10 ENSMUSG00000020176 139.52 1449.36 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
58. Ldha ENSMUSG00000063229 139.52 1449.36 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
59. Map1b ENSMUSG00000052727 136.73 1420.37 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
60. Myl6 ENSMUSG00000090841 136.73 1420.37 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
61. Hsp90aa1 ENSMUSG00000021270 135.34 1405.93 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
62. Rpl37 ENSMUSG00000041841 132.55 1376.95 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
63. Rpl32 ENSMUSG00000057841 131.15 1362.41 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
64. Rrm2 ENSMUSG00000020649 126.97 1318.98 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
65. Gm14303 ENSMUSG00000081344 125.57 1304.44 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
66. Eif5a ENSMUSG00000078812 122.78 1275.46 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
67. Fkbp1a ENSMUSG00000032966 122.78 1275.46 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
68. Ran ENSMUSG00000029430 119.99 1246.48 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
69. Tecr ENSMUSG00000031708 119.99 1246.48 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
70. Pcbp1 ENSMUSG00000051695 118.59 1231.93 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
71. Son ENSMUSG00000022961 118.59 1231.93 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
72. Ndufa12 ENSMUSG00000020022 117.20 1217.49 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
73. Gm5963 ENSMUSG00000052192 115.80 1202.95 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
74. Hbb-bh1 ENSMUSG00000052217 114.41 1188.51 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
75. Gm14586 ENSMUSG00000083621 113.01 1173.97 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
76. Rpl39-ps ENSMUSG00000036305 111.62 1159.53 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
77. Gm5805 ENSMUSG00000061848 107.43 1116.00 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
78. Trim28 ENSMUSG00000005566 107.43 1116.00 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
79. Trp53i11 ENSMUSG00000068735 107.43 1116.00 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
80. Banf1 ENSMUSG00000024844 106.04 1101.56 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
81. Calm1 ENSMUSG00000001175 106.04 1101.56 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
82. Pbx1 ENSMUSG00000052534 103.25 1072.58 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
83. Lamp1 ENSMUSG00000031447 101.85 1058.03 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
84. Rpl8 ENSMUSG00000003970 100.46 1043.59 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
85. Rpl26 ENSMUSG00000060938 99.06 1029.05 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
86. Ywhae ENSMUSG00000020849 94.88 985.63 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
87. Ywhaz ENSMUSG00000022285 93.48 971.09 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
88. Hnrnpa2b1 ENSMUSG00000004980 92.08 956.54 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
89. 2810417H13Rik 90.69 942.10 RIKEN cDNA 2810417H13 gene
90. Cdk4 ENSMUSG00000006728 90.69 942.10 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
91. Fkbp4 ENSMUSG00000030357 89.29 927.56 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
92. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 89.29 927.56 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
93. Crabp1 ENSMUSG00000032291 87.90 913.12 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
94. Ddx5 ENSMUSG00000020719 87.90 913.12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
95. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 87.90 913.12 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
96. Ccnd2 ENSMUSG00000000184 86.50 898.58 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
97. Gm9846 Gm9846 86.50 898.58
98. Ngfrap1 86.50 898.58 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
99. Basp1 ENSMUSG00000045763 83.71 869.59 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
100. Ddx39b ENSMUSG00000019432 83.71 869.59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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