Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s15.

Sample reads: 96,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3620.19 37611.16 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3072.00 31915.87 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2433.69 25284.28 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1789.13 18587.77 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1723.42 17905.09 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1618.92 16819.41 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1080.74 11228.11 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 953.70 9908.26 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Actb ENSMUSG00000029580 880.48 9147.55 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Nd2 ENSMUSG00000064345 874.23 9082.62 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Eef1a1 ENSMUSG00000037742 535.68 5565.33 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Nd5 ENSMUSG00000064367 521.91 5422.27 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. Pkm ENSMUSG00000032294 518.78 5389.75 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
14. mt-Nd3 ENSMUSG00000064360 477.48 4960.67 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. H19 ENSMUSG00000000031 476.85 4954.13 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Rpsa ENSMUSG00000032518 448.69 4661.57 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
17. Hbb-y ENSMUSG00000052187 439.30 4564.01 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Mdk ENSMUSG00000027239 412.39 4284.43 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Cfl1 ENSMUSG00000056201 372.97 3874.89 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
20. Gm13340 ENSMUSG00000083563 355.45 3692.87 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Tuba1b ENSMUSG00000023004 335.42 3484.77 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. mt-Co3 ENSMUSG00000064358 331.67 3445.81 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
23. Igf2 ENSMUSG00000048583 287.86 2990.66 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
24. Npm1 ENSMUSG00000057113 284.11 2951.70 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Tubb5 ENSMUSG00000001525 259.08 2691.65 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Ybx1 ENSMUSG00000028639 224.03 2327.51 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
27. Rps26 ENSMUSG00000025362 222.15 2307.98 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
28. Hnrnpc ENSMUSG00000060373 220.90 2294.99 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
29. Hsp90ab1 ENSMUSG00000023944 209.64 2178.01 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
30. Tpt1 ENSMUSG00000060126 209.01 2171.46 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Hba-x ENSMUSG00000055609 207.14 2152.04 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
32. Set ENSMUSG00000054766 204.63 2125.96 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
33. Ubb ENSMUSG00000019505 203.38 2112.97 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Eif4g2 ENSMUSG00000005610 197.12 2047.93 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Rpl4 ENSMUSG00000032399 196.50 2041.49 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
36. Hmga2 ENSMUSG00000056758 192.74 2002.43 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
37. Nedd4 ENSMUSG00000032216 190.87 1983.00 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
38. Crabp1 ENSMUSG00000032291 188.36 1956.92 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
39. Chchd2 ENSMUSG00000070493 184.61 1917.96 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Rps20 ENSMUSG00000028234 183.98 1911.42 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Rpl18a ENSMUSG00000045128 182.10 1891.89 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
42. Tmsb4x ENSMUSG00000049775 178.98 1859.47 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
43. Tuba1a ENSMUSG00000072235 178.98 1859.47 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
44. Eif5a ENSMUSG00000078812 173.97 1807.42 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
45. Hba-a1 ENSMUSG00000069919 171.47 1781.45 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
46. U2af2 ENSMUSG00000030435 161.45 1677.35 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
47. Tubb2b ENSMUSG00000045136 158.32 1644.83 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
48. Fkbp1a ENSMUSG00000032966 157.07 1631.84 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
49. Rplp1 ENSMUSG00000007892 153.94 1599.33 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
50. Atp5g3 ENSMUSG00000018770 153.32 1592.88 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
51. Map1b ENSMUSG00000052727 153.32 1592.88 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
52. Ldha ENSMUSG00000063229 152.69 1586.34 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
53. Hsp90aa1 ENSMUSG00000021270 151.44 1573.35 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
54. Rpl23 ENSMUSG00000071415 148.94 1547.38 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
55. Ywhab ENSMUSG00000018326 148.31 1540.83 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
56. Cox8a ENSMUSG00000035885 146.43 1521.30 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
57. Ran ENSMUSG00000029430 145.81 1514.86 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
58. Trp53i11 ENSMUSG00000068735 143.93 1495.33 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
59. Grb10 ENSMUSG00000020176 143.31 1488.89 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
60. Pabpc1 ENSMUSG00000022283 140.18 1456.37 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
61. Hbb-bh1 ENSMUSG00000052217 139.55 1449.82 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
62. Rpl37 ENSMUSG00000041841 138.93 1443.38 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
63. Eef1b2 ENSMUSG00000025967 133.29 1384.79 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
64. Myl6 ENSMUSG00000090841 133.29 1384.79 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
65. Fscn1 ENSMUSG00000029581 130.79 1358.81 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
66. Rps4x ENSMUSG00000031320 130.16 1352.27 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
67. Gm14303 ENSMUSG00000081344 127.66 1326.30 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
68. Tecr ENSMUSG00000031708 127.66 1326.30 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
69. Ndufa12 ENSMUSG00000020022 127.04 1319.85 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
70. Rps3a1 ENSMUSG00000028081 125.78 1306.76 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
71. Rps5 ENSMUSG00000012848 125.78 1306.76 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
72. Rps9 ENSMUSG00000006333 125.78 1306.76 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
73. Trim28 ENSMUSG00000005566 125.16 1300.32 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
74. Rpl39-ps ENSMUSG00000036305 122.65 1274.25 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
75. Gm10800 ENSMUSG00000075014 121.40 1261.26 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
76. Paics ENSMUSG00000029247 120.15 1248.27 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
77. Pcbp1 ENSMUSG00000051695 117.02 1215.75 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
78. Ywhae ENSMUSG00000020849 116.40 1209.31 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
79. Banf1 ENSMUSG00000024844 115.15 1196.33 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
80. Rpl32 ENSMUSG00000057841 115.15 1196.33 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
81. Cdkn1c ENSMUSG00000037664 110.14 1144.28 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
82. Basp1 ENSMUSG00000045763 107.01 1111.76 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
83. Ago2 ENSMUSG00000036698 105.13 1092.22 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
84. Anp32b ENSMUSG00000028333 105.13 1092.22 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
85. Eef2 ENSMUSG00000034994 104.51 1085.78 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
86. mt-Rnr1 ENSMUSG00000064337 103.88 1079.24 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
87. Lamp1 ENSMUSG00000031447 102.00 1059.71 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
88. Marcksl1 ENSMUSG00000047945 102.00 1059.71 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
89. Rpl41 ENSMUSG00000093674 101.38 1053.27 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
90. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 100.13 1040.28 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
91. Gm10073 ENSMUSG00000060019 98.87 1027.19 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
92. Hnrnpa0 ENSMUSG00000007836 98.87 1027.19 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
93. Sub1 ENSMUSG00000022205 98.25 1020.75 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
94. Sf3b4 ENSMUSG00000068856 96.37 1001.21 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
95. Jund ENSMUSG00000071076, ENSMUSG00000110974 94.49 981.68 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
96. Ndufc2 ENSMUSG00000030647 93.87 975.24 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
97. Son ENSMUSG00000022961 92.62 962.26 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
98. Ddx39b ENSMUSG00000019432 90.74 942.72 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
99. Gm5805 ENSMUSG00000061848 90.74 942.72 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
100. Pbx1 ENSMUSG00000052534 90.74 942.72 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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