Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s13.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3189.23 33132.38 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3182.51 33062.57 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2321.98 24122.66 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2078.59 21594.12 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 1866.54 19391.17 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1752.40 18205.39 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1089.37 11317.28 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Hbb-y ENSMUSG00000052187 969.64 10073.43 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
9. mt-Nd2 ENSMUSG00000064345 848.78 8817.83 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd3 ENSMUSG00000064360 692.12 7190.32 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Eef1a1 ENSMUSG00000037742 652.95 6783.39 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. Actb ENSMUSG00000029580 593.08 6161.41 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Rnr2 ENSMUSG00000064339 575.74 5981.27 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. H19 ENSMUSG00000000031 540.49 5615.06 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Rpsa ENSMUSG00000032518 457.68 4754.76 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Rpl18a ENSMUSG00000045128 454.32 4719.85 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
17. Cfl1 ENSMUSG00000056201 448.17 4655.96 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
18. Pkm ENSMUSG00000032294 406.21 4220.05 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
19. mt-Co3 ENSMUSG00000064358 389.42 4045.62 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
20. Hba-x ENSMUSG00000055609 376.55 3911.92 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
21. Mdk ENSMUSG00000027239 376.55 3911.92 midkine [Source:MGI Symbol;Acc:MGI:96949]
22. Hba-a1 ENSMUSG00000069919 358.09 3720.14 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. Gm13340 ENSMUSG00000083563 344.10 3574.80 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
24. Tuba1b ENSMUSG00000023004 343.54 3568.98 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. mt-Nd5 ENSMUSG00000064367 337.39 3505.09 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
26. Hbb-bh1 ENSMUSG00000052217 333.47 3464.36 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
27. Npm1 ENSMUSG00000057113 303.26 3150.52 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Rps26 ENSMUSG00000025362 281.99 2929.55 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
29. Rpl4 ENSMUSG00000032399 260.73 2708.68 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Eif4g2 ENSMUSG00000005610 248.42 2580.79 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Igf2 ENSMUSG00000048583 243.39 2528.54 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
32. Tubb2b ENSMUSG00000045136 241.71 2511.08 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
33. Tmsb4x ENSMUSG00000049775 233.88 2429.74 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
34. Hnrnpc ENSMUSG00000060373 222.69 2313.49 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
35. Nedd4 ENSMUSG00000032216 221.01 2296.04 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
36. Tubb5 ENSMUSG00000001525 221.01 2296.04 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
37. Tpt1 ENSMUSG00000060126 218.21 2266.95 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Rps20 ENSMUSG00000028234 217.09 2255.31 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
39. Ubb ENSMUSG00000019505 205.34 2133.24 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
40. Hba-a2 ENSMUSG00000069917 202.54 2104.15 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
41. Rplp1 ENSMUSG00000007892 201.98 2098.34 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
42. Rrm2 ENSMUSG00000020649 197.51 2051.90 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
43. Atp5g3 ENSMUSG00000018770 194.15 2016.99 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Hsp90aa1 ENSMUSG00000021270 187.44 1947.28 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
45. Rpl37 ENSMUSG00000041841 187.44 1947.28 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
46. Eif5a ENSMUSG00000078812 186.88 1941.47 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. U2af2 ENSMUSG00000030435 186.88 1941.47 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
48. Ldha ENSMUSG00000063229 180.16 1871.65 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
49. Chchd2 ENSMUSG00000070493 175.13 1819.40 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
50. Crabp1 ENSMUSG00000032291 174.57 1813.58 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
51. Rpl23 ENSMUSG00000071415 173.45 1801.94 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
52. Hsp90ab1 ENSMUSG00000023944 172.33 1790.31 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
53. Rpl39-ps ENSMUSG00000036305 165.62 1720.60 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
54. Banf1 ENSMUSG00000024844 163.38 1697.33 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
55. Rps4x ENSMUSG00000031320 160.02 1662.42 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Eef1b2 ENSMUSG00000025967 159.46 1656.60 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
57. Ran ENSMUSG00000029430 159.46 1656.60 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
58. Gm14303 ENSMUSG00000081344 157.78 1639.15 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
59. mt-Rnr1 ENSMUSG00000064337 154.43 1604.35 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
60. Paics ENSMUSG00000029247 153.31 1592.71 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
61. Fkbp1a ENSMUSG00000032966 151.63 1575.26 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
62. Ybx1 ENSMUSG00000028639 148.27 1540.35 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
63. Rps5 ENSMUSG00000012848 143.79 1493.81 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
64. Grb10 ENSMUSG00000020176 138.76 1441.55 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
65. Trim28 ENSMUSG00000005566 137.64 1429.92 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
66. Set ENSMUSG00000054766 135.40 1406.65 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
67. Cox8a ENSMUSG00000035885 130.93 1360.21 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
68. Ywhab ENSMUSG00000018326 128.13 1331.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
69. Hmga2 ENSMUSG00000056758 125.33 1302.03 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
70. Anp32b ENSMUSG00000028333 123.65 1284.58 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
71. Gm9846 Gm9846 119.18 1238.14
72. Pabpc1 ENSMUSG00000022283 118.62 1232.32 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
73. Gm5963 ENSMUSG00000052192 118.06 1226.51 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
74. Rpl32 ENSMUSG00000057841 115.26 1197.42 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
75. Pcbp1 ENSMUSG00000051695 112.46 1168.33 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
76. Hnrnpa0 ENSMUSG00000007836 110.22 1145.06 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
77. Hnrnpa2b1 ENSMUSG00000004980 109.66 1139.24 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
78. Gm10073 ENSMUSG00000060019 108.55 1127.71 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
79. Gm14586 ENSMUSG00000083621 107.43 1116.07 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
80. Ddx39b ENSMUSG00000019432 106.31 1104.44 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
81. Ccnd2 ENSMUSG00000000184 105.19 1092.80 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
82. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 104.63 1086.98 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
83. Tecr ENSMUSG00000031708 104.63 1086.98 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
84. Myl6 ENSMUSG00000090841 104.07 1081.17 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
85. Gm5805 ENSMUSG00000061848 103.51 1075.35 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
86. Cdkn1c ENSMUSG00000037664 102.95 1069.53 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
87. Ndufa12 ENSMUSG00000020022 102.39 1063.71 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
88. Rps3a1 ENSMUSG00000028081 101.83 1057.89 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
89. Cdk4 ENSMUSG00000006728 101.27 1052.08 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
90. Gm10800 ENSMUSG00000075014 100.71 1046.26 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
91. Tuba1a ENSMUSG00000072235 100.71 1046.26 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
92. Ywhaz ENSMUSG00000022285 100.71 1046.26 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
93. Kpnb1 ENSMUSG00000001440 95.12 988.19 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
94. 2810417H13Rik 94.00 976.55 RIKEN cDNA 2810417H13 gene
95. Sub1 ENSMUSG00000022205 93.44 970.73 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
96. Lamp1 ENSMUSG00000031447 92.88 964.91 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
97. Son ENSMUSG00000022961 92.88 964.91 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
98. Erdr1 92.32 959.10 erythroid differentiation regulator 1, transcript variant 1, non-coding
99. Fkbp4 ENSMUSG00000030357 91.76 953.28 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
100. Gm8292 ENSMUSG00000100215 91.76 953.28 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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