Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s11.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3113.17 32344.70 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2934.32 30486.52 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2557.34 26569.83 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2218.06 23044.84 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2042.71 21223.01 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1967.32 20439.74 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Rnr2 ENSMUSG00000064339 1411.49 14664.87 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1144.10 11886.78 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1071.33 11130.73 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Hbb-y ENSMUSG00000052187 1051.17 10921.27 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. Eef1a1 ENSMUSG00000037742 687.33 7141.11 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Nd3 ENSMUSG00000064360 666.29 6922.51 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 482.19 5009.78 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Rpsa ENSMUSG00000032518 462.90 4809.36 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. mt-Nd5 ENSMUSG00000064367 437.47 4545.15 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
16. H19 ENSMUSG00000000031 431.34 4481.47 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
17. Cfl1 ENSMUSG00000056201 407.67 4235.54 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
18. mt-Co3 ENSMUSG00000064358 396.27 4117.10 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Hba-a1 ENSMUSG00000069919 392.76 4080.63 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
20. Set ENSMUSG00000054766 390.13 4053.31 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
21. Gm13340 ENSMUSG00000083563 362.95 3770.92 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. mt-Rnr1 ENSMUSG00000064337 356.82 3707.23 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
23. Hbb-bh1 ENSMUSG00000052217 335.78 3488.63 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
24. Hba-x ENSMUSG00000055609 334.02 3470.35 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
25. Tuba1b ENSMUSG00000023004 327.01 3397.51 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Npm1 ENSMUSG00000057113 300.71 3124.27 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Mdk ENSMUSG00000027239 295.45 3069.62 midkine [Source:MGI Symbol;Acc:MGI:96949]
28. Rps26 ENSMUSG00000025362 291.94 3033.15 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
29. Pkm ENSMUSG00000032294 262.13 2723.44 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Tmsb4x ENSMUSG00000049775 250.74 2605.10 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
31. Gm10800 ENSMUSG00000075014 235.83 2450.19 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
32. Hba-a2 ENSMUSG00000069917 235.83 2450.19 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
33. Rpl18a ENSMUSG00000045128 228.82 2377.36 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
34. Igf2 ENSMUSG00000048583 227.07 2359.17 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
35. Hnrnpc ENSMUSG00000060373 225.31 2340.89 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
36. Ubb ENSMUSG00000019505 220.93 2295.38 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
37. Rpl4 ENSMUSG00000032399 218.30 2268.06 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Hsp90ab1 ENSMUSG00000023944 215.67 2240.73 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
39. Hmga2 ENSMUSG00000056758 214.79 2231.59 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
40. Tubb2b ENSMUSG00000045136 213.92 2222.55 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
41. Nedd4 ENSMUSG00000032216 210.41 2186.08 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
42. Rplp1 ENSMUSG00000007892 210.41 2186.08 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
43. Atp5g3 ENSMUSG00000018770 200.76 2085.82 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Rpl23 ENSMUSG00000071415 199.01 2067.64 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
45. Tpt1 ENSMUSG00000060126 195.50 2031.17 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
46. Hsp90aa1 ENSMUSG00000021270 193.75 2012.99 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
47. Eif4g2 ENSMUSG00000005610 190.24 1976.52 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
48. Rps20 ENSMUSG00000028234 184.98 1921.87 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Chchd2 ENSMUSG00000070493 180.60 1876.37 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
50. Eif5a ENSMUSG00000078812 180.60 1876.37 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
51. Tubb5 ENSMUSG00000001525 170.08 1767.07 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
52. Rpl39-ps ENSMUSG00000036305 168.33 1748.89 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
53. Banf1 ENSMUSG00000024844 161.31 1675.95 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
54. Eef1b2 ENSMUSG00000025967 161.31 1675.95 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Rrm2 ENSMUSG00000020649 160.44 1666.91 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
56. Rpl37 ENSMUSG00000041841 153.42 1593.98 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
57. Ran ENSMUSG00000029430 150.79 1566.65 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
58. Paics ENSMUSG00000029247 149.04 1548.47 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
59. Ywhab ENSMUSG00000018326 149.04 1548.47 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
60. U2af2 ENSMUSG00000030435 147.29 1530.29 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
61. Ybx1 ENSMUSG00000028639 146.41 1521.15 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
62. Ldha ENSMUSG00000063229 144.66 1502.96 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
63. Gm14303 ENSMUSG00000081344 141.15 1466.50 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
64. Malat1 ENSMUSG00000092341 138.52 1439.17 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
65. Gm5805 ENSMUSG00000061848 137.64 1430.03 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
66. Gm9846 Gm9846 136.77 1420.99
67. Grb10 ENSMUSG00000020176 135.89 1411.85 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
68. Rps4x ENSMUSG00000031320 134.14 1393.67 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Ndufa12 ENSMUSG00000020022 129.75 1348.06 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
70. Trim28 ENSMUSG00000005566 128.88 1339.02 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
71. Rpl32 ENSMUSG00000057841 124.49 1293.41 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
72. 2810417H13Rik 123.61 1284.26 RIKEN cDNA 2810417H13 gene
73. Gm14586 ENSMUSG00000083621 122.74 1275.22 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
74. Pabpc1 ENSMUSG00000022283 121.86 1266.08 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Gm5963 ENSMUSG00000052192 119.23 1238.76 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
76. Cox8a ENSMUSG00000035885 118.35 1229.61 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
77. Gm8292 ENSMUSG00000100215 117.48 1220.57 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
78. Pcbp1 ENSMUSG00000051695 115.72 1202.29 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
79. Rps5 ENSMUSG00000012848 114.85 1193.25 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
80. Anp32b ENSMUSG00000028333 109.59 1138.60 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
81. Ccnd2 ENSMUSG00000000184 109.59 1138.60 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
82. Rps3a1 ENSMUSG00000028081 108.71 1129.46 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
83. Fkbp1a ENSMUSG00000032966 106.08 1102.13 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
84. Hnrnpa2b1 ENSMUSG00000004980 105.20 1092.99 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
85. Tecr ENSMUSG00000031708 104.33 1083.95 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
86. Rps8 ENSMUSG00000047675 103.45 1074.81 ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
87. Hnrnph1 ENSMUSG00000007850 99.07 1029.30 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
88. Rpl8 ENSMUSG00000003970 99.07 1029.30 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
89. Crabp1 ENSMUSG00000032291 96.44 1001.98 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
90. Kpnb1 ENSMUSG00000001440 96.44 1001.98 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
91. Myl6 ENSMUSG00000090841 94.68 983.69 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
92. Son ENSMUSG00000022961 94.68 983.69 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
93. Rpl13a ENSMUSG00000074129 93.81 974.65 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
94. Cadm1 ENSMUSG00000032076 92.05 956.37 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
95. Ddx39b ENSMUSG00000019432 92.05 956.37 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
96. Gm15459 ENSMUSG00000100801 91.18 947.33 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
97. Rps15 ENSMUSG00000063457 91.18 947.33 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
98. Eef2 ENSMUSG00000034994 90.30 938.18 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
99. Serbp1 ENSMUSG00000036371 90.30 938.18 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
100. Top1 ENSMUSG00000070544 89.42 929.04 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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