Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s1.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3327.97 34580.75 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2676.56 27811.99 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2074.25 21553.42 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1720.72 17879.91 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1582.15 16440.03 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1241.71 12902.54 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 908.92 9444.54 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 827.08 8594.14 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Hbb-y ENSMUSG00000052187 784.53 8152.01 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. Actb ENSMUSG00000029580 632.86 6576.01 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. Eef1a1 ENSMUSG00000037742 615.40 6394.59 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Nd2 ENSMUSG00000064345 518.29 5385.52 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Mdk ENSMUSG00000027239 511.74 5317.46 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Rpsa ENSMUSG00000032518 483.37 5022.67 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. mt-Nd3 ENSMUSG00000064360 426.63 4433.09 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. Pkm ENSMUSG00000032294 354.62 3684.84 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
17. H19 ENSMUSG00000000031 346.98 3605.45 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. Tuba1b ENSMUSG00000023004 339.34 3526.06 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
19. mt-Co3 ENSMUSG00000064358 337.16 3503.41 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
20. Gm13340 ENSMUSG00000083563 333.89 3469.43 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Hba-x ENSMUSG00000055609 330.61 3435.35 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
22. Cfl1 ENSMUSG00000056201 314.25 3265.35 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Gm10800 ENSMUSG00000075014 290.24 3015.87 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
24. Rrm2 ENSMUSG00000020649 289.15 3004.54 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
25. Set ENSMUSG00000054766 286.97 2981.89 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
26. mt-Nd5 ENSMUSG00000064367 277.15 2879.85 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
27. Rpl18a ENSMUSG00000045128 268.42 2789.14 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
28. U2af2 ENSMUSG00000030435 260.78 2709.75 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
29. Rps26 ENSMUSG00000025362 246.60 2562.41 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
30. Hba-a1 ENSMUSG00000069919 244.41 2539.65 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
31. Hnrnpc ENSMUSG00000060373 243.32 2528.32 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
32. Tmsb4x ENSMUSG00000049775 241.14 2505.67 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
33. Tubb2b ENSMUSG00000045136 236.78 2460.37 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
34. Hbb-bh1 ENSMUSG00000052217 232.41 2414.96 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
35. Tpt1 ENSMUSG00000060126 232.41 2414.96 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
36. Ybx1 ENSMUSG00000028639 230.23 2392.31 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
37. Tubb5 ENSMUSG00000001525 228.05 2369.65 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
38. Ubb ENSMUSG00000019505 221.50 2301.59 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
39. Npm1 ENSMUSG00000057113 220.41 2290.27 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
40. Eif4g2 ENSMUSG00000005610 212.77 2210.88 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
41. Rpl4 ENSMUSG00000032399 197.50 2052.21 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Hsp90ab1 ENSMUSG00000023944 194.22 2018.13 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
43. Rps20 ENSMUSG00000028234 192.04 1995.48 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
44. Chchd2 ENSMUSG00000070493 190.95 1984.15 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
45. Atp5g3 ENSMUSG00000018770 187.68 1950.17 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
46. Eif5a ENSMUSG00000078812 187.68 1950.17 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Cox8a ENSMUSG00000035885 172.40 1791.40 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
48. Crabp1 ENSMUSG00000032291 172.40 1791.40 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
49. Nedd4 ENSMUSG00000032216 170.22 1768.75 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
50. Grb10 ENSMUSG00000020176 169.13 1757.42 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
51. Ran ENSMUSG00000029430 165.85 1723.34 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
52. Rpl23 ENSMUSG00000071415 164.76 1712.01 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
53. Hmga2 ENSMUSG00000056758 163.67 1700.69 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
54. Trim28 ENSMUSG00000005566 157.12 1632.63 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
55. Ccnd2 ENSMUSG00000000184 153.85 1598.65 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
56. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 152.76 1587.32 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
57. Trp53i11 ENSMUSG00000068735 152.76 1587.32 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
58. Rplp1 ENSMUSG00000007892 149.49 1553.34 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
59. Gm14303 ENSMUSG00000081344 142.94 1485.28 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
60. Banf1 ENSMUSG00000024844 138.57 1439.87 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
61. Igf2 ENSMUSG00000048583 137.48 1428.55 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
62. Malat1 ENSMUSG00000092341 137.48 1428.55 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
63. Hsp90aa1 ENSMUSG00000021270 135.30 1405.89 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
64. Pabpc1 ENSMUSG00000022283 135.30 1405.89 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
65. Hba-a2 ENSMUSG00000069917 132.03 1371.92 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
66. Ldha ENSMUSG00000063229 132.03 1371.92 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
67. Rpl37 ENSMUSG00000041841 132.03 1371.92 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
68. Rps5 ENSMUSG00000012848 130.94 1360.59 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
69. Map1b ENSMUSG00000052727 128.75 1337.83 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
70. Ywhab ENSMUSG00000018326 128.75 1337.83 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
71. Erdr1 127.66 1326.51 erythroid differentiation regulator 1, transcript variant 1, non-coding
72. 2810417H13Rik 120.02 1247.12 RIKEN cDNA 2810417H13 gene
73. Ywhae ENSMUSG00000020849 120.02 1247.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
74. Marcksl1 ENSMUSG00000047945 118.93 1235.80 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
75. Paics ENSMUSG00000029247 117.84 1224.47 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
76. Pcbp1 ENSMUSG00000051695 116.75 1213.14 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
77. Eef1b2 ENSMUSG00000025967 115.66 1201.82 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
78. Fkbp1a ENSMUSG00000032966 115.66 1201.82 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
79. Rps4x ENSMUSG00000031320 115.66 1201.82 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
80. Top2a ENSMUSG00000020914 115.66 1201.82 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
81. Lamp1 ENSMUSG00000031447 113.48 1179.16 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
82. Gnai2 ENSMUSG00000032562 112.39 1167.84 guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]
83. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 110.20 1145.08 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
84. Rpl32 ENSMUSG00000057841 109.11 1133.76 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
85. Fscn1 ENSMUSG00000029581 108.02 1122.43 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
86. Rpl39-ps ENSMUSG00000036305 106.93 1111.10 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
87. Sf3b4 ENSMUSG00000068856 106.93 1111.10 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
88. Myl6 ENSMUSG00000090841 104.75 1088.45 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
89. Pbx1 ENSMUSG00000052534 103.66 1077.13 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
90. Rpl8 ENSMUSG00000003970 103.66 1077.13 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
91. Son ENSMUSG00000022961 103.66 1077.13 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
92. mt-Rnr1 ENSMUSG00000064337 103.66 1077.13 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
93. Tecr ENSMUSG00000031708 101.48 1054.47 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
94. Ago2 ENSMUSG00000036698 100.38 1043.04 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
95. Sox2 ENSMUSG00000074637 99.29 1031.72 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
96. Rps3a1 ENSMUSG00000028081 98.20 1020.39 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
97. Wnt1 ENSMUSG00000022997 97.11 1009.06 wingless-type MMTV integration site family, member 1 [Source:MGI Symbol;Acc:MGI:98953]
98. Ddx5 ENSMUSG00000020719 94.93 986.41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
99. Rps9 ENSMUSG00000006333 94.93 986.41 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
100. Ndufc2 ENSMUSG00000030647 93.84 975.09 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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