Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s78.

Sample reads: 96,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4887.54 50781.64 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 4511.57 46875.30 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 3759.65 39062.84 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd1 ENSMUSG00000064341 3383.68 35156.50 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co1 ENSMUSG00000064351 2255.79 23437.70 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
6. mt-Co2 ENSMUSG00000064354 1503.86 15625.13 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. Rpsa ENSMUSG00000032518 1127.89 11718.80 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
8. Tubb5 ENSMUSG00000001525 1127.89 11718.80 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
9. mt-Nd3 ENSMUSG00000064360 1127.89 11718.80 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Nd4 ENSMUSG00000064363 1127.89 11718.80 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. Atp5b ENSMUSG00000025393 751.93 7812.57 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [Source:MGI Symbol;Acc:MGI:107801]
12. Casp9 ENSMUSG00000028914 751.93 7812.57 caspase 9 [Source:MGI Symbol;Acc:MGI:1277950]
13. Csnk1d ENSMUSG00000025162 751.93 7812.57 casein kinase 1, delta [Source:MGI Symbol;Acc:MGI:1355272]
14. Eef1a1 ENSMUSG00000037742 751.93 7812.57 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. H19 ENSMUSG00000000031 751.93 7812.57 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Hmga2 ENSMUSG00000056758 751.93 7812.57 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. Hspa5 ENSMUSG00000026864 751.93 7812.57 heat shock protein 5 [Source:MGI Symbol;Acc:MGI:95835]
18. Mtfr1 ENSMUSG00000027601 751.93 7812.57 mitochondrial fission regulator 1 [Source:MGI Symbol;Acc:MGI:1914722]
19. Ophn1 ENSMUSG00000031214 751.93 7812.57 oligophrenin 1 [Source:MGI Symbol;Acc:MGI:2151070]
20. Pdia6 ENSMUSG00000020571 751.93 7812.57 protein disulfide isomerase associated 6 [Source:MGI Symbol;Acc:MGI:1919103]
21. Rbm25 ENSMUSG00000010608 751.93 7812.57 RNA binding motif protein 25 [Source:MGI Symbol;Acc:MGI:1914289]
22. Rps3 ENSMUSG00000030744 751.93 7812.57 ribosomal protein S3 [Source:MGI Symbol;Acc:MGI:1350917]
23. mt-Co3 ENSMUSG00000064358 751.93 7812.57 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
24. mt-Nd2 ENSMUSG00000064345 751.93 7812.57 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
25. mt-Nd5 ENSMUSG00000064367 751.93 7812.57 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
26. mt-Rnr1 ENSMUSG00000064337 751.93 7812.57 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
27. 1110004F10Rik ENSMUSG00000030663 375.96 3906.23 RIKEN cDNA 1110004F10 gene [Source:MGI Symbol;Acc:MGI:1929274]
28. 2410002F23Rik ENSMUSG00000045411 375.96 3906.23 RIKEN cDNA 2410002F23 gene [Source:MGI Symbol;Acc:MGI:1914226]
29. 2410004N09Rik 2410004N09Rik 375.96 3906.23
30. 4933436C20Rik 4933436C20Rik 375.96 3906.23
31. Actb ENSMUSG00000029580 375.96 3906.23 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
32. Actr3 ENSMUSG00000026341 375.96 3906.23 ARP3 actin-related protein 3 [Source:MGI Symbol;Acc:MGI:1921367]
33. Amfr ENSMUSG00000031751 375.96 3906.23 autocrine motility factor receptor [Source:MGI Symbol;Acc:MGI:1345634]
34. Ano6 ENSMUSG00000064210 375.96 3906.23 anoctamin 6 [Source:MGI Symbol;Acc:MGI:2145890]
35. Ap2a2 ENSMUSG00000002957 375.96 3906.23 adaptor-related protein complex 2, alpha 2 subunit [Source:MGI Symbol;Acc:MGI:101920]
36. Arid3a ENSMUSG00000019564 375.96 3906.23 AT rich interactive domain 3A (BRIGHT-like) [Source:MGI Symbol;Acc:MGI:1328360]
37. Asxl1 ENSMUSG00000042548 375.96 3906.23 additional sex combs like 1 [Source:MGI Symbol;Acc:MGI:2684063]
38. Atad2 ENSMUSG00000022360, ENSMUSG00000116053 375.96 3906.23 ATPase family, AAA domain containing 2 [Source:MGI Symbol;Acc:MGI:1917722]
39. Atp5c1 ENSMUSG00000025781 375.96 3906.23 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:MGI Symbol;Acc:MGI:1261437]
40. Baz1b ENSMUSG00000002748 375.96 3906.23 bromodomain adjacent to zinc finger domain, 1B [Source:MGI Symbol;Acc:MGI:1353499]
41. C330027C09Rik 375.96 3906.23 RIKEN cDNA C330027C09 gene, transcript variant X2
42. Capn6 ENSMUSG00000067276 375.96 3906.23 calpain 6 [Source:MGI Symbol;Acc:MGI:1100850]
43. Caprin1 ENSMUSG00000027184 375.96 3906.23 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
44. Carhsp1 ENSMUSG00000008393 375.96 3906.23 calcium regulated heat stable protein 1 [Source:MGI Symbol;Acc:MGI:1196368]
45. Ccdc115 ENSMUSG00000042111 375.96 3906.23 coiled-coil domain containing 115 [Source:MGI Symbol;Acc:MGI:1916918]
46. Ccnd1 ENSMUSG00000070348 375.96 3906.23 cyclin D1 [Source:MGI Symbol;Acc:MGI:88313]
47. Cct6a ENSMUSG00000029447 375.96 3906.23 chaperonin containing Tcp1, subunit 6a (zeta) [Source:MGI Symbol;Acc:MGI:107943]
48. Cd24a ENSMUSG00000047139 375.96 3906.23 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
49. Cdc27 ENSMUSG00000020687 375.96 3906.23 cell division cycle 27 [Source:MGI Symbol;Acc:MGI:102685]
50. Cdc42 ENSMUSG00000006699 375.96 3906.23 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
51. Cdk4 ENSMUSG00000006728 375.96 3906.23 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
52. Celf2 ENSMUSG00000002107 375.96 3906.23 CUGBP, Elav-like family member 2 [Source:MGI Symbol;Acc:MGI:1338822]
53. Cep57 ENSMUSG00000031922 375.96 3906.23 centrosomal protein 57 [Source:MGI Symbol;Acc:MGI:1915551]
54. Cep89 ENSMUSG00000023072 375.96 3906.23 centrosomal protein 89 [Source:MGI Symbol;Acc:MGI:1919390]
55. Cks2 ENSMUSG00000062248 375.96 3906.23 CDC28 protein kinase regulatory subunit 2 [Source:MGI Symbol;Acc:MGI:1913447]
56. Cnot4 ENSMUSG00000038784 375.96 3906.23 CCR4-NOT transcription complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1859026]
57. Col18a1 ENSMUSG00000001435 375.96 3906.23 collagen, type XVIII, alpha 1 [Source:MGI Symbol;Acc:MGI:88451]
58. Copa ENSMUSG00000026553 375.96 3906.23 coatomer protein complex subunit alpha [Source:MGI Symbol;Acc:MGI:1334462]
59. Coro1a ENSMUSG00000030707 375.96 3906.23 coronin, actin binding protein 1A [Source:MGI Symbol;Acc:MGI:1345961]
60. Cox7b ENSMUSG00000031231 375.96 3906.23 cytochrome c oxidase subunit 7B [Source:MGI Symbol;Acc:MGI:1913392]
61. Cse1l ENSMUSG00000002718 375.96 3906.23 chromosome segregation 1-like (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1339951]
62. Csnk1g3 ENSMUSG00000073563 375.96 3906.23 casein kinase 1, gamma 3 [Source:MGI Symbol;Acc:MGI:1917675]
63. Csrp2 ENSMUSG00000020186 375.96 3906.23 cysteine and glycine-rich protein 2 [Source:MGI Symbol;Acc:MGI:1202907]
64. Ctnnd1 ENSMUSG00000034101 375.96 3906.23 catenin (cadherin associated protein), delta 1 [Source:MGI Symbol;Acc:MGI:105100]
65. Cyb5r3 ENSMUSG00000018042 375.96 3906.23 cytochrome b5 reductase 3 [Source:MGI Symbol;Acc:MGI:94893]
66. Ddx19a ENSMUSG00000015023 375.96 3906.23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a [Source:MGI Symbol;Acc:MGI:99526]
67. Ddx42 ENSMUSG00000020705 375.96 3906.23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Source:MGI Symbol;Acc:MGI:1919297]
68. Dnajb11 ENSMUSG00000004460 375.96 3906.23 DnaJ heat shock protein family (Hsp40) member B11 [Source:MGI Symbol;Acc:MGI:1915088]
69. Dnmt3a ENSMUSG00000020661 375.96 3906.23 DNA methyltransferase 3A [Source:MGI Symbol;Acc:MGI:1261827]
70. Dynlrb1 ENSMUSG00000047459 375.96 3906.23 dynein light chain roadblock-type 1 [Source:MGI Symbol;Acc:MGI:1914318]
71. E2f1 ENSMUSG00000027490 375.96 3906.23 E2F transcription factor 1 [Source:MGI Symbol;Acc:MGI:101941]
72. Eef1b2 ENSMUSG00000025967 375.96 3906.23 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
73. Eef2 ENSMUSG00000034994 375.96 3906.23 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
74. Elp2 ENSMUSG00000024271 375.96 3906.23 elongator acetyltransferase complex subunit 2 [Source:MGI Symbol;Acc:MGI:1889642]
75. Etaa1 ENSMUSG00000016984 375.96 3906.23 Ewing tumor-associated antigen 1 [Source:MGI Symbol;Acc:MGI:1915395]
76. Exo1 ENSMUSG00000039748 375.96 3906.23 exonuclease 1 [Source:MGI Symbol;Acc:MGI:1349427]
77. Fga ENSMUSG00000028001 375.96 3906.23 fibrinogen alpha chain [Source:MGI Symbol;Acc:MGI:1316726]
78. Fgfrl1 ENSMUSG00000008090 375.96 3906.23 fibroblast growth factor receptor-like 1 [Source:MGI Symbol;Acc:MGI:2150920]
79. Fig4 ENSMUSG00000038417 375.96 3906.23 FIG4 phosphoinositide 5-phosphatase [Source:MGI Symbol;Acc:MGI:2143585]
80. Fkbp9 ENSMUSG00000029781 375.96 3906.23 FK506 binding protein 9 [Source:MGI Symbol;Acc:MGI:1350921]
81. Fmr1 ENSMUSG00000000838 375.96 3906.23 fragile X mental retardation 1 [Source:MGI Symbol;Acc:MGI:95564]
82. Gatad2a ENSMUSG00000036180 375.96 3906.23 GATA zinc finger domain containing 2A [Source:MGI Symbol;Acc:MGI:2384585]
83. Git1 ENSMUSG00000011877 375.96 3906.23 G protein-coupled receptor kinase-interactor 1 [Source:MGI Symbol;Acc:MGI:1927140]
84. Gm10275 ENSMUSG00000069682 375.96 3906.23 predicted pseudogene 10275 [Source:MGI Symbol;Acc:MGI:3704354]
85. Gm14586 ENSMUSG00000083621 375.96 3906.23 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
86. Gm26924 Gm26924 375.96 3906.23
87. Gm9843 ENSMUSG00000050299 375.96 3906.23 predicted gene 9843 [Source:MGI Symbol;Acc:MGI:3708621]
88. Gnai2 ENSMUSG00000032562 375.96 3906.23 guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]
89. Gnb2l1 Gnb2l1 375.96 3906.23
90. Gpatch11 ENSMUSG00000050668 375.96 3906.23 G patch domain containing 11 [Source:MGI Symbol;Acc:MGI:1858435]
91. Gpc1 ENSMUSG00000034220 375.96 3906.23 glypican 1 [Source:MGI Symbol;Acc:MGI:1194891]
92. Gpx4 ENSMUSG00000075706 375.96 3906.23 glutathione peroxidase 4 [Source:MGI Symbol;Acc:MGI:104767]
93. Grb10 ENSMUSG00000020176 375.96 3906.23 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
94. Hba-a1 ENSMUSG00000069919 375.96 3906.23 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
95. Hba-x ENSMUSG00000055609 375.96 3906.23 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
96. Hbb-y ENSMUSG00000052187 375.96 3906.23 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
97. Hjurp ENSMUSG00000044783 375.96 3906.23 Holliday junction recognition protein [Source:MGI Symbol;Acc:MGI:2685821]
98. Hsp90aa1 ENSMUSG00000021270 375.96 3906.23 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
99. Hsp90ab1 ENSMUSG00000023944 375.96 3906.23 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
100. Igf2 ENSMUSG00000048583 375.96 3906.23 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA