Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s72.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 7073.27 73490.44 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 4547.10 47243.83 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 4547.10 47243.83 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd1 ENSMUSG00000064341 4041.87 41994.55 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 3536.63 36745.17 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Rnr1 ENSMUSG00000064337 3284.02 34120.58 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
7. mt-Co1 ENSMUSG00000064351 2526.17 26246.61 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 2273.55 23621.91 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Nd2 ENSMUSG00000064345 2020.93 20997.22 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd5 ENSMUSG00000064367 1768.32 18372.63 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Nd4 ENSMUSG00000064363 1515.70 15747.94 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Actb ENSMUSG00000029580 1263.08 13123.25 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Ptma ENSMUSG00000026238 757.85 7873.97 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
14. Atp5b ENSMUSG00000025393 505.23 5249.28 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [Source:MGI Symbol;Acc:MGI:107801]
15. Cecr2 ENSMUSG00000071226 505.23 5249.28 CECR2, histone acetyl-lysine reader [Source:MGI Symbol;Acc:MGI:1923799]
16. Chchd2 ENSMUSG00000070493 505.23 5249.28 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
17. Dek ENSMUSG00000021377 505.23 5249.28 DEK oncogene (DNA binding) [Source:MGI Symbol;Acc:MGI:1926209]
18. Eef1a1 ENSMUSG00000037742 505.23 5249.28 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Fam193a ENSMUSG00000037210 505.23 5249.28 family with sequence similarity 193, member A [Source:MGI Symbol;Acc:MGI:2447768]
20. H19 ENSMUSG00000000031 505.23 5249.28 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
21. Hdgf ENSMUSG00000004897 505.23 5249.28 hepatoma-derived growth factor [Source:MGI Symbol;Acc:MGI:1194494]
22. Hnrnpa1 ENSMUSG00000046434 505.23 5249.28 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
23. Igf2 ENSMUSG00000048583 505.23 5249.28 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
24. Ndufv3 ENSMUSG00000024038 505.23 5249.28 NADH:ubiquinone oxidoreductase core subunit V3 [Source:MGI Symbol;Acc:MGI:1890894]
25. Rpl23 ENSMUSG00000071415 505.23 5249.28 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
26. Rps26 ENSMUSG00000025362 505.23 5249.28 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
27. Rpsa ENSMUSG00000032518 505.23 5249.28 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Smarcc1 ENSMUSG00000032481 505.23 5249.28 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 [Source:MGI Symbol;Acc:MGI:1203524]
29. Tgfbi ENSMUSG00000035493 505.23 5249.28 transforming growth factor, beta induced [Source:MGI Symbol;Acc:MGI:99959]
30. Tomm70a ENSMUSG00000022752 505.23 5249.28 translocase of outer mitochondrial membrane 70A [Source:MGI Symbol;Acc:MGI:106295]
31. Trove2 ENSMUSG00000018199 505.23 5249.28 TROVE domain family, member 2 [Source:MGI Symbol;Acc:MGI:106652]
32. Upf3b ENSMUSG00000036572 505.23 5249.28 UPF3 regulator of nonsense transcripts homolog B (yeast) [Source:MGI Symbol;Acc:MGI:1915384]
33. Wdr89 ENSMUSG00000045690 505.23 5249.28 WD repeat domain 89 [Source:MGI Symbol;Acc:MGI:1919588]
34. Ybx3 ENSMUSG00000030189 505.23 5249.28 Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670]
35. mt-Co3 ENSMUSG00000064358 505.23 5249.28 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
36. 9430023L20Rik 9430023L20Rik 252.62 2624.69
37. Afg3l2 ENSMUSG00000024527 252.62 2624.69 AFG3-like AAA ATPase 2 [Source:MGI Symbol;Acc:MGI:1916847]
38. Ago2 ENSMUSG00000036698 252.62 2624.69 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
39. Akap12 ENSMUSG00000038587 252.62 2624.69 A kinase (PRKA) anchor protein (gravin) 12 [Source:MGI Symbol;Acc:MGI:1932576]
40. Aldh4a1 ENSMUSG00000028737 252.62 2624.69 aldehyde dehydrogenase 4 family, member A1 [Source:MGI Symbol;Acc:MGI:2443883]
41. Ankrd17 ENSMUSG00000055204 252.62 2624.69 ankyrin repeat domain 17 [Source:MGI Symbol;Acc:MGI:1932101]
42. Apeh ENSMUSG00000032590 252.62 2624.69 acylpeptide hydrolase [Source:MGI Symbol;Acc:MGI:88041]
43. Arf1 ENSMUSG00000048076 252.62 2624.69 ADP-ribosylation factor 1 [Source:MGI Symbol;Acc:MGI:99431]
44. Arid4b ENSMUSG00000039219 252.62 2624.69 AT rich interactive domain 4B (RBP1-like) [Source:MGI Symbol;Acc:MGI:2137512]
45. Arl6ip4 ENSMUSG00000029404 252.62 2624.69 ADP-ribosylation factor-like 6 interacting protein 4 [Source:MGI Symbol;Acc:MGI:1929500]
46. Armcx2 ENSMUSG00000033436 252.62 2624.69 armadillo repeat containing, X-linked 2 [Source:MGI Symbol;Acc:MGI:1914666]
47. Aste1 ENSMUSG00000032567 252.62 2624.69 asteroid homolog 1 [Source:MGI Symbol;Acc:MGI:1913845]
48. Atxn7l3 ENSMUSG00000059995 252.62 2624.69 ataxin 7-like 3 [Source:MGI Symbol;Acc:MGI:3036270]
49. Aurkb ENSMUSG00000020897 252.62 2624.69 aurora kinase B [Source:MGI Symbol;Acc:MGI:107168]
50. B930082K07Rik ENSMUSG00000097734 252.62 2624.69 RIKEN cDNA B930082K07 gene [Source:MGI Symbol;Acc:MGI:2445108]
51. Bdp1 ENSMUSG00000049658 252.62 2624.69 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:MGI Symbol;Acc:MGI:1347077]
52. Bex1 ENSMUSG00000050071 252.62 2624.69 brain expressed X-linked 1 [Source:MGI Symbol;Acc:MGI:1328321]
53. Birc6 ENSMUSG00000024073 252.62 2624.69 baculoviral IAP repeat-containing 6 [Source:MGI Symbol;Acc:MGI:1276108]
54. Bmpr1a ENSMUSG00000021796 252.62 2624.69 bone morphogenetic protein receptor, type 1A [Source:MGI Symbol;Acc:MGI:1338938]
55. Brd4 ENSMUSG00000024002 252.62 2624.69 bromodomain containing 4 [Source:MGI Symbol;Acc:MGI:1888520]
56. Btf3 ENSMUSG00000021660 252.62 2624.69 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
57. Ccdc59 ENSMUSG00000019897 252.62 2624.69 coiled-coil domain containing 59 [Source:MGI Symbol;Acc:MGI:1289302]
58. Ccnd1 ENSMUSG00000070348 252.62 2624.69 cyclin D1 [Source:MGI Symbol;Acc:MGI:88313]
59. Ccnd2 ENSMUSG00000000184 252.62 2624.69 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
60. Ccrn4l Ccrn4l 252.62 2624.69
61. Cd81 ENSMUSG00000037706 252.62 2624.69 CD81 antigen [Source:MGI Symbol;Acc:MGI:1096398]
62. Cdh11 ENSMUSG00000031673 252.62 2624.69 cadherin 11 [Source:MGI Symbol;Acc:MGI:99217]
63. Cdkn1c ENSMUSG00000037664 252.62 2624.69 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
64. Chd4 ENSMUSG00000063870 252.62 2624.69 chromodomain helicase DNA binding protein 4 [Source:MGI Symbol;Acc:MGI:1344380]
65. Chd8 ENSMUSG00000053754 252.62 2624.69 chromodomain helicase DNA binding protein 8 [Source:MGI Symbol;Acc:MGI:1915022]
66. Cltc ENSMUSG00000047126 252.62 2624.69 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
67. Cog4 ENSMUSG00000031753 252.62 2624.69 component of oligomeric golgi complex 4 [Source:MGI Symbol;Acc:MGI:2142808]
68. Crabp1 ENSMUSG00000032291 252.62 2624.69 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
69. Ctsz ENSMUSG00000016256 252.62 2624.69 cathepsin Z [Source:MGI Symbol;Acc:MGI:1891190]
70. Daam1 ENSMUSG00000034574 252.62 2624.69 dishevelled associated activator of morphogenesis 1 [Source:MGI Symbol;Acc:MGI:1914596]
71. Dclre1a ENSMUSG00000025077 252.62 2624.69 DNA cross-link repair 1A [Source:MGI Symbol;Acc:MGI:1930042]
72. Dkc1 ENSMUSG00000031403 252.62 2624.69 dyskeratosis congenita 1, dyskerin [Source:MGI Symbol;Acc:MGI:1861727]
73. Dnajc15 ENSMUSG00000022013 252.62 2624.69 DnaJ heat shock protein family (Hsp40) member C15 [Source:MGI Symbol;Acc:MGI:1913398]
74. Dnal4 ENSMUSG00000022420 252.62 2624.69 dynein, axonemal, light chain 4 [Source:MGI Symbol;Acc:MGI:1859217]
75. Dynlrb1 ENSMUSG00000047459 252.62 2624.69 dynein light chain roadblock-type 1 [Source:MGI Symbol;Acc:MGI:1914318]
76. Dynlt3 ENSMUSG00000031176 252.62 2624.69 dynein light chain Tctex-type 3 [Source:MGI Symbol;Acc:MGI:1914367]
77. Eef2 ENSMUSG00000034994 252.62 2624.69 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
78. Eif3a ENSMUSG00000024991 252.62 2624.69 eukaryotic translation initiation factor 3, subunit A [Source:MGI Symbol;Acc:MGI:95301]
79. Emg1 ENSMUSG00000004268 252.62 2624.69 EMG1 N1-specific pseudouridine methyltransferase [Source:MGI Symbol;Acc:MGI:1315195]
80. Eno3 ENSMUSG00000060600 252.62 2624.69 enolase 3, beta muscle [Source:MGI Symbol;Acc:MGI:95395]
81. Eral1 ENSMUSG00000020832 252.62 2624.69 Era (G-protein)-like 1 (E. coli) [Source:MGI Symbol;Acc:MGI:1889295]
82. Ercc4 ENSMUSG00000022545 252.62 2624.69 excision repair cross-complementing rodent repair deficiency, complementation group 4 [Source:MGI Symbol;Acc:MGI:1354163]
83. Ero1l ENSMUSG00000021831 252.62 2624.69 ERO1-like (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1354385]
84. Fads1 ENSMUSG00000010663 252.62 2624.69 fatty acid desaturase 1 [Source:MGI Symbol;Acc:MGI:1923517]
85. Fbl ENSMUSG00000046865 252.62 2624.69 fibrillarin [Source:MGI Symbol;Acc:MGI:95486]
86. Fgd4 ENSMUSG00000022788 252.62 2624.69 FYVE, RhoGEF and PH domain containing 4 [Source:MGI Symbol;Acc:MGI:2183747]
87. Fus ENSMUSG00000030795 252.62 2624.69 fused in sarcoma [Source:MGI Symbol;Acc:MGI:1353633]
88. Fzd7 ENSMUSG00000041075 252.62 2624.69 frizzled class receptor 7 [Source:MGI Symbol;Acc:MGI:108570]
89. Gcn1l1 ENSMUSG00000041638 252.62 2624.69 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) [Source:MGI Symbol;Acc:MGI:2444248]
90. Gde1 ENSMUSG00000033917 252.62 2624.69 glycerophosphodiester phosphodiesterase 1 [Source:MGI Symbol;Acc:MGI:1891827]
91. Gfm1 ENSMUSG00000027774 252.62 2624.69 G elongation factor, mitochondrial 1 [Source:MGI Symbol;Acc:MGI:107339]
92. Gli3 ENSMUSG00000021318 252.62 2624.69 GLI-Kruppel family member GLI3 [Source:MGI Symbol;Acc:MGI:95729]
93. Gm10073 ENSMUSG00000060019 252.62 2624.69 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
94. Gm10076 ENSMUSG00000060143 252.62 2624.69 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
95. Gm15387 ENSMUSG00000082585 252.62 2624.69 predicted gene 15387 [Source:MGI Symbol;Acc:MGI:3705374]
96. Gm15500 ENSMUSG00000086583 252.62 2624.69 predicted pseudogene 15500 [Source:MGI Symbol;Acc:MGI:3782947]
97. Gm16185 ENSMUSG00000084911 252.62 2624.69 predicted gene 16185 [Source:MGI Symbol;Acc:MGI:3802169]
98. Gm17555 ENSMUSG00000090353 252.62 2624.69 predicted gene, 17555 [Source:MGI Symbol;Acc:MGI:4937189]
99. Gm6088 ENSMUSG00000083646, ENSMUSG00000115899 252.62 2624.69 predicted gene 6088 [Source:MGI Symbol;Acc:MGI:3647646]
100. Gm7536 ENSMUSG00000057036 252.62 2624.69 predicted gene 7536 [Source:MGI Symbol;Acc:MGI:3645137]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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