Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s69.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 6099.11 63369.05 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Nd1 ENSMUSG00000064341 3867.73 40185.27 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
3. mt-Cytb ENSMUSG00000064370 3644.59 37866.87 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Atp6 ENSMUSG00000064357 2900.80 30138.98 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2380.14 24729.38 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2082.62 21638.18 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 2008.24 20865.38 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 1561.97 16228.69 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Nd5 ENSMUSG00000064367 1413.21 14683.09 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. Ptma ENSMUSG00000026238 1190.07 12364.69 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
11. mt-Nd2 ENSMUSG00000064345 1190.07 12364.69 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Rnr1 ENSMUSG00000064337 1190.07 12364.69 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
13. Gm10800 ENSMUSG00000075014 892.55 9273.49 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
14. Igf2 ENSMUSG00000048583 669.41 6955.09 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Mdk ENSMUSG00000027239 595.04 6182.40 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Meg3 ENSMUSG00000021268 595.04 6182.40 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
17. Peg3 ENSMUSG00000002265 595.04 6182.40 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
18. Gm26870 ENSMUSG00000097312 520.66 5409.60 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
19. Eif5a ENSMUSG00000078812 446.28 4636.80 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
20. Gm17132 ENSMUSG00000061331 446.28 4636.80 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
21. H19 ENSMUSG00000000031 446.28 4636.80 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
22. Rpl4 ENSMUSG00000032399 446.28 4636.80 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
23. Actb ENSMUSG00000029580 371.90 3864.00 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
24. Gm26924 Gm26924 371.90 3864.00
25. 2810417H13Rik 297.52 3091.20 RIKEN cDNA 2810417H13 gene
26. Cnbp ENSMUSG00000030057 297.52 3091.20 cellular nucleic acid binding protein [Source:MGI Symbol;Acc:MGI:88431]
27. Copz1 ENSMUSG00000060992 297.52 3091.20 coatomer protein complex, subunit zeta 1 [Source:MGI Symbol;Acc:MGI:1929063]
28. Dynll1 ENSMUSG00000009013 297.52 3091.20 dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457]
29. Zfp266 ENSMUSG00000060510 297.52 3091.20 zinc finger protein 266 [Source:MGI Symbol;Acc:MGI:1924769]
30. Apex2 ENSMUSG00000025269 223.14 2318.40 apurinic/apyrimidinic endonuclease 2 [Source:MGI Symbol;Acc:MGI:1924872]
31. Cdkn1c ENSMUSG00000037664 223.14 2318.40 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
32. Chchd2 ENSMUSG00000070493 223.14 2318.40 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
33. Col1a1 ENSMUSG00000001506 223.14 2318.40 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
34. Fkbp1a ENSMUSG00000032966 223.14 2318.40 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
35. Gps2 ENSMUSG00000023170 223.14 2318.40 G protein pathway suppressor 2 [Source:MGI Symbol;Acc:MGI:1891751]
36. Lbh ENSMUSG00000024063 223.14 2318.40 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
37. Malat1 ENSMUSG00000092341 223.14 2318.40 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
38. Marcks ENSMUSG00000069662 223.14 2318.40 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
39. Mat2a ENSMUSG00000053907, ENSMUSG00000104463 223.14 2318.40 methionine adenosyltransferase II, alpha [Source:MGI Symbol;Acc:MGI:2443731]
40. Mex3b ENSMUSG00000057706 223.14 2318.40 mex3 RNA binding family member B [Source:MGI Symbol;Acc:MGI:1918252]
41. Ndufa12 ENSMUSG00000020022 223.14 2318.40 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
42. Pak1ip1 ENSMUSG00000038683 223.14 2318.40 PAK1 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1915333]
43. Ran ENSMUSG00000029430 223.14 2318.40 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
44. Rbbp5 ENSMUSG00000026439 223.14 2318.40 retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit [Source:MGI Symbol;Acc:MGI:1918367]
45. Slc30a4 ENSMUSG00000005802, ENSMUSG00000111214 223.14 2318.40 solute carrier family 30 (zinc transporter), member 4 [Source:MGI Symbol;Acc:MGI:1345282]
46. Slk ENSMUSG00000025060 223.14 2318.40 STE20-like kinase [Source:MGI Symbol;Acc:MGI:103241]
47. Smo ENSMUSG00000001761 223.14 2318.40 smoothened, frizzled class receptor [Source:MGI Symbol;Acc:MGI:108075]
48. Tbcb ENSMUSG00000006095 223.14 2318.40 tubulin folding cofactor B [Source:MGI Symbol;Acc:MGI:1913661]
49. Ywhag ENSMUSG00000051391 223.14 2318.40 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
50. mt-Co3 ENSMUSG00000064358 223.14 2318.40 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
51. Acin1 ENSMUSG00000022185 148.76 1545.60 apoptotic chromatin condensation inducer 1 [Source:MGI Symbol;Acc:MGI:1891824]
52. Acsl3 ENSMUSG00000032883 148.76 1545.60 acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
53. Actn1 ENSMUSG00000015143 148.76 1545.60 actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
54. Ahcyl1 ENSMUSG00000027893 148.76 1545.60 S-adenosylhomocysteine hydrolase-like 1 [Source:MGI Symbol;Acc:MGI:2385184]
55. Arfgef2 ENSMUSG00000074582 148.76 1545.60 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) [Source:MGI Symbol;Acc:MGI:2139354]
56. Arhgef7 ENSMUSG00000031511 148.76 1545.60 Rho guanine nucleotide exchange factor (GEF7) [Source:MGI Symbol;Acc:MGI:1860493]
57. Atp5d ENSMUSG00000003072 148.76 1545.60 ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit [Source:MGI Symbol;Acc:MGI:1913293]
58. Atp6v1f ENSMUSG00000004285 148.76 1545.60 ATPase, H+ transporting, lysosomal V1 subunit F [Source:MGI Symbol;Acc:MGI:1913394]
59. Atxn7l3b ENSMUSG00000074748 148.76 1545.60 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
60. Bbx ENSMUSG00000022641 148.76 1545.60 bobby sox HMG box containing [Source:MGI Symbol;Acc:MGI:1917758]
61. Bckdhb ENSMUSG00000032263 148.76 1545.60 branched chain ketoacid dehydrogenase E1, beta polypeptide [Source:MGI Symbol;Acc:MGI:88137]
62. Bex2 ENSMUSG00000042750 148.76 1545.60 brain expressed X-linked 2 [Source:MGI Symbol;Acc:MGI:1338017]
63. Brd4 ENSMUSG00000024002 148.76 1545.60 bromodomain containing 4 [Source:MGI Symbol;Acc:MGI:1888520]
64. Camkk2 ENSMUSG00000029471 148.76 1545.60 calcium/calmodulin-dependent protein kinase kinase 2, beta [Source:MGI Symbol;Acc:MGI:2444812]
65. Cask ENSMUSG00000031012 148.76 1545.60 calcium/calmodulin-dependent serine protein kinase (MAGUK family) [Source:MGI Symbol;Acc:MGI:1309489]
66. Ccrn4l Ccrn4l 148.76 1545.60
67. Cdc40 ENSMUSG00000038446 148.76 1545.60 cell division cycle 40 [Source:MGI Symbol;Acc:MGI:1918963]
68. Cox8a ENSMUSG00000035885 148.76 1545.60 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
69. Ctnna1 ENSMUSG00000037815 148.76 1545.60 catenin (cadherin associated protein), alpha 1 [Source:MGI Symbol;Acc:MGI:88274]
70. Ddx39b ENSMUSG00000019432 148.76 1545.60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
71. Dnajc13 ENSMUSG00000032560 148.76 1545.60 DnaJ heat shock protein family (Hsp40) member C13 [Source:MGI Symbol;Acc:MGI:2676368]
72. Dock11 ENSMUSG00000031093 148.76 1545.60 dedicator of cytokinesis 11 [Source:MGI Symbol;Acc:MGI:1923224]
73. Eef1a1 ENSMUSG00000037742 148.76 1545.60 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
74. Eef1b2 ENSMUSG00000025967 148.76 1545.60 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
75. Eny2 ENSMUSG00000022338 148.76 1545.60 ENY2 transcription and export complex 2 subunit [Source:MGI Symbol;Acc:MGI:1919286]
76. Fam129b ENSMUSG00000026796 148.76 1545.60 family with sequence similarity 129, member B [Source:MGI Symbol;Acc:MGI:2442910]
77. Fam168a ENSMUSG00000029461 148.76 1545.60 family with sequence similarity 168, member A [Source:MGI Symbol;Acc:MGI:2442372]
78. G3bp1 ENSMUSG00000018583 148.76 1545.60 GTPase activating protein (SH3 domain) binding protein 1 [Source:MGI Symbol;Acc:MGI:1351465]
79. Gas1 ENSMUSG00000052957 148.76 1545.60 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
80. Gata6 ENSMUSG00000005836 148.76 1545.60 GATA binding protein 6 [Source:MGI Symbol;Acc:MGI:107516]
81. Gdi2 ENSMUSG00000021218 148.76 1545.60 guanosine diphosphate (GDP) dissociation inhibitor 2 [Source:MGI Symbol;Acc:MGI:99845]
82. Gm10076 ENSMUSG00000060143 148.76 1545.60 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
83. Gm14586 ENSMUSG00000083621 148.76 1545.60 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
84. Gm21897 ENSMUSG00000094472 148.76 1545.60 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
85. Gm5506 Gm5506 148.76 1545.60
86. Gm5963 ENSMUSG00000052192 148.76 1545.60 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
87. Gmeb1 ENSMUSG00000028901 148.76 1545.60 glucocorticoid modulatory element binding protein 1 [Source:MGI Symbol;Acc:MGI:2135604]
88. Gpx4 ENSMUSG00000075706 148.76 1545.60 glutathione peroxidase 4 [Source:MGI Symbol;Acc:MGI:104767]
89. H3f3b ENSMUSG00000016559 148.76 1545.60 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
90. Hmces ENSMUSG00000030060 148.76 1545.60 5-hydroxymethylcytosine (hmC) binding, ES cell specific [Source:MGI Symbol;Acc:MGI:1914053]
91. Hmga2 ENSMUSG00000056758 148.76 1545.60 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
92. Hnrnpa2b1 ENSMUSG00000004980 148.76 1545.60 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
93. Hnrnpf ENSMUSG00000042079 148.76 1545.60 heterogeneous nuclear ribonucleoprotein F [Source:MGI Symbol;Acc:MGI:2138741]
94. Hp1bp3 ENSMUSG00000028759 148.76 1545.60 heterochromatin protein 1, binding protein 3 [Source:MGI Symbol;Acc:MGI:109369]
95. Hsp90aa1 ENSMUSG00000021270 148.76 1545.60 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
96. Hsp90ab1 ENSMUSG00000023944 148.76 1545.60 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
97. Ldha ENSMUSG00000063229 148.76 1545.60 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
98. Luc7l3 ENSMUSG00000020863 148.76 1545.60 LUC7-like 3 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1914934]
99. Marcksl1 ENSMUSG00000047945 148.76 1545.60 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
100. Mis18bp1 ENSMUSG00000047534 148.76 1545.60 MIS18 binding protein 1 [Source:MGI Symbol;Acc:MGI:2145099]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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