Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s68.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5492.53 57066.09 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 3065.60 31850.86 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2682.40 27869.50 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2490.80 25878.82 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1660.53 17252.51 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1596.66 16588.92 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1405.06 14598.24 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Ptma ENSMUSG00000026238 1341.20 13934.75 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
9. mt-Nd2 ENSMUSG00000064345 1277.33 13271.16 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd3 ENSMUSG00000064360 1149.60 11944.07 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Actb ENSMUSG00000029580 1021.87 10616.99 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Nd5 ENSMUSG00000064367 894.13 9289.80 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. Eef1a1 ENSMUSG00000037742 638.67 6635.63 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Flrt3 ENSMUSG00000051379 638.67 6635.63 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
15. mt-Co3 ENSMUSG00000064358 574.80 5972.04 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Meg3 ENSMUSG00000021268 447.07 4644.95 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
17. Rpsa ENSMUSG00000032518 447.07 4644.95 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. Cdkn1c ENSMUSG00000037664 383.20 3981.36 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
19. Gm10800 ENSMUSG00000075014 383.20 3981.36 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
20. mt-Rnr1 ENSMUSG00000064337 383.20 3981.36 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
21. Ago2 ENSMUSG00000036698 319.33 3317.76 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
22. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 319.33 3317.76 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
23. H19 ENSMUSG00000000031 319.33 3317.76 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
24. Igf2 ENSMUSG00000048583 319.33 3317.76 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
25. Mdk ENSMUSG00000027239 319.33 3317.76 midkine [Source:MGI Symbol;Acc:MGI:96949]
26. Ngfrap1 319.33 3317.76 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
27. Rpl13a ENSMUSG00000074129 319.33 3317.76 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
28. Rpl23 ENSMUSG00000071415 319.33 3317.76 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
29. Cep57 ENSMUSG00000031922 255.47 2654.27 centrosomal protein 57 [Source:MGI Symbol;Acc:MGI:1915551]
30. Dad1 ENSMUSG00000022174 255.47 2654.27 defender against cell death 1 [Source:MGI Symbol;Acc:MGI:101912]
31. Eef1d ENSMUSG00000055762 255.47 2654.27 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) [Source:MGI Symbol;Acc:MGI:1913906]
32. Eif4g2 ENSMUSG00000005610 255.47 2654.27 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Gm5963 ENSMUSG00000052192 255.47 2654.27 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
34. Hsp90ab1 ENSMUSG00000023944 255.47 2654.27 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Igfbp5 ENSMUSG00000026185 255.47 2654.27 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
36. Krtcap2 ENSMUSG00000042747 255.47 2654.27 keratinocyte associated protein 2 [Source:MGI Symbol;Acc:MGI:1913309]
37. Luc7l3 ENSMUSG00000020863 255.47 2654.27 LUC7-like 3 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1914934]
38. Nbea ENSMUSG00000027799 255.47 2654.27 neurobeachin [Source:MGI Symbol;Acc:MGI:1347075]
39. Nedd4 ENSMUSG00000032216 255.47 2654.27 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
40. Rpl32 ENSMUSG00000057841 255.47 2654.27 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
41. Rrm2 ENSMUSG00000020649 255.47 2654.27 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
42. Sub1 ENSMUSG00000022205 255.47 2654.27 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
43. Ywhab ENSMUSG00000018326 255.47 2654.27 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
44. Ywhae ENSMUSG00000020849 255.47 2654.27 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
45. 2610018G03Rik 2610018G03Rik 191.60 1990.68
46. Acta2 ENSMUSG00000035783 191.60 1990.68 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
47. Actr1a ENSMUSG00000025228 191.60 1990.68 ARP1 actin-related protein 1A, centractin alpha [Source:MGI Symbol;Acc:MGI:1858964]
48. Atp5b ENSMUSG00000025393 191.60 1990.68 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [Source:MGI Symbol;Acc:MGI:107801]
49. Atxn7l3b ENSMUSG00000074748 191.60 1990.68 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
50. Calm1 ENSMUSG00000001175 191.60 1990.68 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
51. Cbx5 ENSMUSG00000009575 191.60 1990.68 chromobox 5 [Source:MGI Symbol;Acc:MGI:109372]
52. Cfl1 ENSMUSG00000056201 191.60 1990.68 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
53. Ctnna1 ENSMUSG00000037815 191.60 1990.68 catenin (cadherin associated protein), alpha 1 [Source:MGI Symbol;Acc:MGI:88274]
54. Dapk1 ENSMUSG00000021559 191.60 1990.68 death associated protein kinase 1 [Source:MGI Symbol;Acc:MGI:1916885]
55. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 191.60 1990.68 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
56. Eif4b ENSMUSG00000058655 191.60 1990.68 eukaryotic translation initiation factor 4B [Source:MGI Symbol;Acc:MGI:95304]
57. Gm14284 Gm14284 191.60 1990.68
58. Gm15387 ENSMUSG00000082585 191.60 1990.68 predicted gene 15387 [Source:MGI Symbol;Acc:MGI:3705374]
59. Gm17132 ENSMUSG00000061331 191.60 1990.68 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
60. Gm2000 ENSMUSG00000078193 191.60 1990.68 predicted gene 2000 [Source:MGI Symbol;Acc:MGI:3780170]
61. Gps2 ENSMUSG00000023170 191.60 1990.68 G protein pathway suppressor 2 [Source:MGI Symbol;Acc:MGI:1891751]
62. H3f3b ENSMUSG00000016559 191.60 1990.68 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
63. Hs3st3a1 ENSMUSG00000047759 191.60 1990.68 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 [Source:MGI Symbol;Acc:MGI:1333861]
64. Lamp1 ENSMUSG00000031447 191.60 1990.68 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
65. Limd2 ENSMUSG00000040699 191.60 1990.68 LIM domain containing 2 [Source:MGI Symbol;Acc:MGI:1915053]
66. Mapre1 ENSMUSG00000027479 191.60 1990.68 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
67. Mrfap1 ENSMUSG00000055302 191.60 1990.68 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
68. Nisch ENSMUSG00000021910 191.60 1990.68 nischarin [Source:MGI Symbol;Acc:MGI:1928323]
69. Pkm ENSMUSG00000032294 191.60 1990.68 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
70. Psen1 ENSMUSG00000019969 191.60 1990.68 presenilin 1 [Source:MGI Symbol;Acc:MGI:1202717]
71. Psmb1 ENSMUSG00000014769 191.60 1990.68 proteasome (prosome, macropain) subunit, beta type 1 [Source:MGI Symbol;Acc:MGI:104884]
72. Rpl18a ENSMUSG00000045128 191.60 1990.68 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
73. Rpl37 ENSMUSG00000041841 191.60 1990.68 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
74. Rpl39-ps ENSMUSG00000036305 191.60 1990.68 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
75. Rpl41 ENSMUSG00000093674 191.60 1990.68 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
76. Rps20 ENSMUSG00000028234 191.60 1990.68 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
77. Rps26 ENSMUSG00000025362 191.60 1990.68 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
78. Sep-02 Sep-02 191.60 1990.68
79. Tsn ENSMUSG00000026374 191.60 1990.68 translin [Source:MGI Symbol;Acc:MGI:109263]
80. Tuba1b ENSMUSG00000023004 191.60 1990.68 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
81. Tubb5 ENSMUSG00000001525 191.60 1990.68 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
82. Txn1 ENSMUSG00000028367 191.60 1990.68 thioredoxin 1 [Source:MGI Symbol;Acc:MGI:98874]
83. Ube2h ENSMUSG00000039159 191.60 1990.68 ubiquitin-conjugating enzyme E2H [Source:MGI Symbol;Acc:MGI:104632]
84. Xrn2 ENSMUSG00000027433 191.60 1990.68 5'-3' exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:894687]
85. 2810417H13Rik 127.73 1327.08 RIKEN cDNA 2810417H13 gene
86. Aff3 ENSMUSG00000037138 127.73 1327.08 AF4/FMR2 family, member 3 [Source:MGI Symbol;Acc:MGI:106927]
87. Anapc5 ENSMUSG00000029472 127.73 1327.08 anaphase-promoting complex subunit 5 [Source:MGI Symbol;Acc:MGI:1929722]
88. Anp32b ENSMUSG00000028333 127.73 1327.08 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
89. Atad1 ENSMUSG00000013662 127.73 1327.08 ATPase family, AAA domain containing 1 [Source:MGI Symbol;Acc:MGI:1915229]
90. Atp2b1 ENSMUSG00000019943 127.73 1327.08 ATPase, Ca++ transporting, plasma membrane 1 [Source:MGI Symbol;Acc:MGI:104653]
91. Bcl9 ENSMUSG00000038256 127.73 1327.08 B cell CLL/lymphoma 9 [Source:MGI Symbol;Acc:MGI:1924828]
92. Brd4 ENSMUSG00000024002 127.73 1327.08 bromodomain containing 4 [Source:MGI Symbol;Acc:MGI:1888520]
93. Cadm1 ENSMUSG00000032076 127.73 1327.08 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
94. Capns1 ENSMUSG00000001794 127.73 1327.08 calpain, small subunit 1 [Source:MGI Symbol;Acc:MGI:88266]
95. Caprin1 ENSMUSG00000027184 127.73 1327.08 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
96. Cct3 ENSMUSG00000001416 127.73 1327.08 chaperonin containing Tcp1, subunit 3 (gamma) [Source:MGI Symbol;Acc:MGI:104708]
97. Cdh11 ENSMUSG00000031673 127.73 1327.08 cadherin 11 [Source:MGI Symbol;Acc:MGI:99217]
98. Cdk4 ENSMUSG00000006728 127.73 1327.08 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
99. Chchd2 ENSMUSG00000070493 127.73 1327.08 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
100. Cit ENSMUSG00000029516 127.73 1327.08 citron [Source:MGI Symbol;Acc:MGI:105313]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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