Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s66.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2710.46 28162.37 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2633.75 27365.33 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Rnr2 ENSMUSG00000064339 2491.29 25885.14 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd1 ENSMUSG00000064341 2396.31 24898.27 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2312.29 24025.28 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. Ptma ENSMUSG00000026238 2005.45 20837.14 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Nd3 ENSMUSG00000064360 1716.87 17838.72 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
8. mt-Nd4 ENSMUSG00000064363 1537.88 15978.97 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
9. mt-Co1 ENSMUSG00000064351 1311.40 13625.78 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Actb ENSMUSG00000029580 1000.90 10399.61 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd2 ENSMUSG00000064345 960.72 9982.13 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. Eef1a1 ENSMUSG00000037742 701.36 7287.31 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. mt-Nd5 ENSMUSG00000064367 675.79 7021.63 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
14. mt-Rnr1 ENSMUSG00000064337 635.61 6604.15 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
15. Rpsa ENSMUSG00000032518 405.47 4212.94 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. mt-Co3 ENSMUSG00000064358 405.47 4212.94 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Mdk ENSMUSG00000027239 390.86 4061.14 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Npm1 ENSMUSG00000057113 365.29 3795.46 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
19. H19 ENSMUSG00000000031 314.15 3264.10 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
20. Hsp90ab1 ENSMUSG00000023944 295.89 3074.37 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
21. Tuba1b ENSMUSG00000023004 255.70 2656.79 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Eif5a ENSMUSG00000078812 222.83 2315.26 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
23. Rpl23 ENSMUSG00000071415 219.17 2277.23 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
24. Tubb5 ENSMUSG00000001525 219.17 2277.23 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Igf2 ENSMUSG00000048583 215.52 2239.31 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
26. Atp5g3 ENSMUSG00000018770 208.22 2163.46 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
27. Eif4g2 ENSMUSG00000005610 208.22 2163.46 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
28. Tpt1 ENSMUSG00000060126 208.22 2163.46 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Chchd2 ENSMUSG00000070493 186.30 1935.70 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
30. Col1a1 ENSMUSG00000001506 186.30 1935.70 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
31. Hmga2 ENSMUSG00000056758 186.30 1935.70 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
32. Hsp90aa1 ENSMUSG00000021270 182.65 1897.78 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
33. Ubb ENSMUSG00000019505 182.65 1897.78 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Gm13340 ENSMUSG00000083563 178.99 1859.75 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
35. Pkm ENSMUSG00000032294 178.99 1859.75 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
36. Ran ENSMUSG00000029430 171.69 1783.90 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
37. Rpl4 ENSMUSG00000032399 171.69 1783.90 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Eef1b2 ENSMUSG00000025967 164.38 1707.95 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
39. Rps20 ENSMUSG00000028234 164.38 1707.95 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Cfl1 ENSMUSG00000056201 157.08 1632.10 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
41. Ybx1 ENSMUSG00000028639 146.12 1518.22 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
42. Ngfrap1 142.46 1480.20 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
43. Gm10800 ENSMUSG00000075014 138.81 1442.27 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
44. Set ENSMUSG00000054766 138.81 1442.27 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
45. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 135.16 1404.35 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
46. Rpl39-ps ENSMUSG00000036305 135.16 1404.35 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
47. Fkbp1a ENSMUSG00000032966 131.50 1366.32 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
48. Pbx1 ENSMUSG00000052534 131.50 1366.32 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
49. Rpl32 ENSMUSG00000057841 131.50 1366.32 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
50. 2810417H13Rik 127.85 1328.39 RIKEN cDNA 2810417H13 gene
51. Hmgn1 ENSMUSG00000040681 127.85 1328.39 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
52. Rpl18a ENSMUSG00000045128 127.85 1328.39 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
53. Rps3a1 ENSMUSG00000028081 127.85 1328.39 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
54. Tmsb4x ENSMUSG00000049775 127.85 1328.39 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
55. Rpl41 ENSMUSG00000093674 124.20 1290.47 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
56. Rps26 ENSMUSG00000025362 124.20 1290.47 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
57. Hnrnpa2b1 ENSMUSG00000004980 116.89 1214.52 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
58. Rps4x ENSMUSG00000031320 116.89 1214.52 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
59. Col3a1 ENSMUSG00000026043 113.24 1176.59 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
60. Marcks ENSMUSG00000069662 113.24 1176.59 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
61. Pabpc1 ENSMUSG00000022283 113.24 1176.59 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Peg3 ENSMUSG00000002265 113.24 1176.59 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
63. Crabp1 ENSMUSG00000032291 109.59 1138.67 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
64. Nasp ENSMUSG00000028693 109.59 1138.67 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
65. Serbp1 ENSMUSG00000036371 109.59 1138.67 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
66. Nedd4 ENSMUSG00000032216 105.93 1100.64 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
67. Pcbp1 ENSMUSG00000051695 105.93 1100.64 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
68. Rplp1 ENSMUSG00000007892 105.93 1100.64 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
69. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 105.93 1100.64 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
70. Son ENSMUSG00000022961 105.93 1100.64 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
71. Ywhab ENSMUSG00000018326 105.93 1100.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
72. Fn1 ENSMUSG00000026193 102.28 1062.72 fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
73. Gm14303 ENSMUSG00000081344 102.28 1062.72 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
74. Hnrnpc ENSMUSG00000060373 102.28 1062.72 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
75. Marcksl1 ENSMUSG00000047945 102.28 1062.72 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
76. Meg3 ENSMUSG00000021268 102.28 1062.72 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
77. Calr ENSMUSG00000003814 98.63 1024.79 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
78. Eef2 ENSMUSG00000034994 98.63 1024.79 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
79. Rpl26 ENSMUSG00000060938 98.63 1024.79 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
80. Rpl37 ENSMUSG00000041841 98.63 1024.79 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
81. Sub1 ENSMUSG00000022205 98.63 1024.79 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
82. Hnrnpk ENSMUSG00000021546 94.98 986.87 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
83. Morf4l1 ENSMUSG00000062270 94.98 986.87 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
84. Rpl13a ENSMUSG00000074129 94.98 986.87 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
85. Rps5 ENSMUSG00000012848 94.98 986.87 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
86. Srsf3 ENSMUSG00000071172 94.98 986.87 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
87. Wbp5 94.98 986.87 WW domain binding protein 5
88. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 91.32 948.84 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
89. Gm26917 ENSMUSG00000097971 91.32 948.84 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
90. Ldha ENSMUSG00000063229 91.32 948.84 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
91. Rrm2 ENSMUSG00000020649 91.32 948.84 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
92. U2af2 ENSMUSG00000030435 91.32 948.84 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
93. Calm1 ENSMUSG00000001175 87.67 910.91 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
94. Gnb2l1 Gnb2l1 87.67 910.91
95. Hnrnph1 ENSMUSG00000007850 87.67 910.91 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
96. Mapre1 ENSMUSG00000027479 87.67 910.91 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
97. Rpl8 ENSMUSG00000003970 87.67 910.91 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
98. Anp32b ENSMUSG00000028333 84.02 872.99 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
99. Fkbp4 ENSMUSG00000030357 84.02 872.99 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
100. Gm5805 ENSMUSG00000061848 84.02 872.99 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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